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IMGVR_UViG_3300025174_001046-3300025174-Ga0209324_1002118010
Arc-VirIMGVR_UViG_3300025174_001046-3300025174-Ga0209324_1002118010
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-102
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05065.20 best | Phage_capsid | 37.9 | 2.00e-09 | 98.5% | 23.8% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 48.0 | 3.66e-01 | 84.8% | 59.6% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 33.0 | 2.73e-01 | 100.0% | 27.9% |
| 5w17A01 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.52 | 43.0 | 3.41e-01 | 97.0% | 63.3% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 35.0 | 2.33e-01 | 81.8% | 16.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4873245 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.80 | 66.0 | 5.24e-01 | 98.5% | 46.1% |
| 3587769 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 61.0 | 3.98e-01 | 100.0% | 21.0% |
| 3591371 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.61 | 49.0 | 3.28e-01 | 90.9% | 73.2% |
| 2997715 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.58 | 39.0 | 2.61e-01 | 71.2% | 50.5% |
| 4013561 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.16e-01 | 75.8% | 90.4% |
| 3595596 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.52 | 39.0 | 2.87e-01 | 84.8% | 79.5% |
| 3394321 | 9.1.1.45 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C | 0.51 | 35.0 | 2.71e-01 | 74.2% | 97.7% |
| 3509180 | 9.2.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C | 0.50 | 35.0 | 2.70e-01 | 75.8% | 97.1% |
| 2893651 | 304.51.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs | 0.50 | 34.0 | 2.51e-01 | 71.2% | 38.4% |