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IMGVR_UViG_3300025174_001715-3300025174-Ga0209324_1000018864
Arc-VirIMGVR_UViG_3300025174_001715-3300025174-Ga0209324_1000018864
Identity
- Kingdom:
- archaea
Quality
66.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-98_133-200
D2
medium
residues 207-238
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.77 | 57.0 | 5.64e-01 | 84.4% | 76.5% |
| 4gnxC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 44.0 | 2.86e-01 | 81.2% | 15.3% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 50.0 | 4.13e-01 | 93.8% | 53.2% |
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 47.0 | 4.11e-01 | 93.8% | 55.6% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 42.0 | 2.93e-01 | 81.2% | 79.5% |
| 4pqxA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.59 | 48.0 | 3.84e-01 | 100.0% | 67.1% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 43.0 | 4.15e-01 | 84.4% | 64.1% |
| 2vhjA02 | 2.30.270.20 | Mainly Beta › Roll › duf1285 protein fold › | 0.58 | 43.0 | 3.67e-01 | 90.6% | 71.0% |
| 2iz4A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.57 | 40.0 | 3.60e-01 | 96.9% | 46.9% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 3.59e-01 | 84.4% | 48.3% |
| 4fnfA00 | 2.40.50.50 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 43.0 | 3.32e-01 | 100.0% | 72.4% |
| 2wtvA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.55 | 38.0 | 2.50e-01 | 78.1% | 34.1% |
| 1pmtA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 41.0 | 3.19e-01 | 96.9% | 75.5% |
| 2kssA01 | 2.30.30.630 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 41.0 | 3.52e-01 | 93.8% | 58.7% |
| 3pfmA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 42.0 | 2.60e-01 | 96.9% | 19.3% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 38.0 | 2.21e-01 | 81.2% | 79.4% |
| 4jedA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 37.0 | 3.00e-01 | 100.0% | 70.4% |
| 1okjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 40.0 | 2.95e-01 | 87.5% | 33.7% |
| 7miqA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 42.0 | 3.34e-01 | 90.6% | 93.3% |
| 2xi9A02 | 2.30.30.670 | Mainly Beta › Roll › SH3 type barrels. › Thioester domain | 0.52 | 39.0 | 3.00e-01 | 96.9% | 88.2% |
| 3ol0B00 | 6.20.90.30 | Special › Other non-globular › SH3 type barrels. › | 0.52 | 37.0 | 3.56e-01 | 75.0% | 58.5% |
| 4uopA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 36.0 | 2.76e-01 | 84.4% | 26.9% |
| 4yapA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 37.0 | 2.76e-01 | 100.0% | 55.6% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 39.0 | 2.42e-01 | 96.9% | 19.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002993 | 377.2.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › Auto_anti-p27 | 0.95 | 72.0 | 7.04e-01 | 84.4% | 74.3% |
| 4965299 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.95 | 76.0 | 7.78e-01 | 90.6% | 93.3% |
| 4950681 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.94 | 76.0 | 5.51e-01 | 96.9% | 35.0% |
| 5011203 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.94 | 77.0 | 6.81e-01 | 90.6% | 64.4% |
| 3554930 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.93 | 79.0 | 6.15e-01 | 93.8% | 46.2% |
| 4943324 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.91 | 75.0 | 6.95e-01 | 93.8% | 72.5% |
| 4934076 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.90 | 73.0 | 6.79e-01 | 93.8% | 72.5% |
| 5047811 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.89 | 71.0 | 6.39e-01 | 93.8% | 64.4% |
| 3997399 | 375.1.1.85 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 | 0.87 | 74.0 | 7.31e-01 | 100.0% | 91.4% |
| 4945686 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 51.0 | 3.34e-01 | 84.4% | 16.5% |
| 4246187 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.71 | 55.0 | 3.41e-01 | 87.5% | 17.4% |
| 4251952 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.71 | 55.0 | 3.87e-01 | 87.5% | 32.4% |
| 3807630 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.67 | 49.0 | 3.12e-01 | 81.2% | 14.4% |
| 3990390 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.65 | 48.0 | 4.70e-01 | 84.4% | 71.4% |
| 3310237 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.63 | 48.0 | 4.58e-01 | 90.6% | 67.5% |
| 3447770 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.62 | 48.0 | 4.73e-01 | 93.8% | 82.9% |
| 3321224 | 376.1.1.25 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UDP | 0.61 | 45.0 | 3.81e-01 | 87.5% | 60.0% |
| 4986272 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 45.0 | 3.99e-01 | 84.4% | 63.6% |
| 3874660 | 2.1.1.131 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_C | 0.59 | 44.0 | 2.85e-01 | 93.8% | 28.1% |
| 3804264 | 64.1.1.8 ↗ | beta meanders › WW domain-like › WW domain › WW domain › DUF7028 | 0.58 | 46.0 | 3.53e-01 | 96.9% | 37.6% |
| 4373832 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 46.0 | 3.39e-01 | 100.0% | 52.4% |
| 4933326 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.58 | 47.0 | 3.44e-01 | 93.8% | 76.1% |
| 3329078 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.58 | 46.0 | 4.36e-01 | 93.8% | 77.5% |
| 5081569 | 1.1.9.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA | 0.58 | 41.0 | 3.21e-01 | 96.9% | 95.0% |
| 3230056 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.57 | 44.0 | 3.16e-01 | 93.8% | 67.6% |
| 4188685 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 41.0 | 2.46e-01 | 84.4% | 10.2% |
| 4011843 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.56 | 40.0 | 3.16e-01 | 84.4% | 56.7% |
| 3939639 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.56 | 43.0 | 3.18e-01 | 96.9% | 72.8% |
| 4968925 | 375.1.1.356 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29210 | 0.56 | 39.0 | 3.82e-01 | 81.2% | 65.0% |
| 3699853 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 44.0 | 3.45e-01 | 100.0% | 67.5% |
| 3214264 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.54 | 44.0 | 3.40e-01 | 100.0% | 37.8% |
| 4980099 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.52 | 40.0 | 2.73e-01 | 87.5% | 22.8% |
| 4775977 | 6.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF | 0.52 | 37.0 | 3.51e-01 | 75.0% | 55.8% |
| 4982289 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.50 | 34.0 | 3.00e-01 | 100.0% | 72.5% |