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IMGVR_UViG_3300025288_001033-3300025288-Ga0210044_1001272913
Arc-VirIMGVR_UViG_3300025288_001033-3300025288-Ga0210044_1001272913
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-145
Domain cluster:
rep: IMGVR_UViG_3300000174_000151-3300000174-SI60aug11_200mDRAFT_10045821__D26-132
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08804.17 best | gp32 | 89.1 | 6.10e-25 | 94.6% | 50.7% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.86 | 79.0 | 6.15e-01 | 100.0% | 49.1% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.60 | 33.0 | 3.14e-01 | 100.0% | 46.5% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 33.0 | 3.38e-01 | 84.7% | 59.3% |
| 2dkmA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 28.0 | 2.96e-01 | 79.3% | 51.0% |
| 1xf1A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 3.52e-01 | 87.4% | 65.3% |
| 1ayrB02 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 3.99e-01 | 92.8% | 87.0% |
| 3l5iA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 31.0 | 3.39e-01 | 87.4% | 68.2% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.50e-01 | 87.4% | 65.5% |
| 6brbD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 29.0 | 3.20e-01 | 81.1% | 64.4% |
| 1lvbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 29.0 | 2.97e-01 | 79.3% | 53.7% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 40.0 | 3.69e-01 | 100.0% | 63.5% |
| 2czrA02 | 3.90.79.30 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain | 0.50 | 31.0 | 3.12e-01 | 91.9% | 56.7% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 29.0 | 3.12e-01 | 88.3% | 64.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 378 | 2.1.1.45 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 | 0.87 | 79.0 | 6.24e-01 | 100.0% | 51.0% |
| 3573974 | 2.1.1.45 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 | 0.84 | 69.0 | 5.62e-01 | 100.0% | 50.0% |
| 3942656 | 2.1.1.45 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 | 0.68 | 61.0 | 4.98e-01 | 99.1% | 88.3% |
| 4296312 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.58 | 30.0 | 3.29e-01 | 81.1% | 57.9% |
| 3625468 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 40.0 | 3.85e-01 | 87.4% | 62.3% |
| 3581667 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.57 | 40.0 | 3.91e-01 | 87.4% | 64.8% |
| 4251040 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 30.0 | 2.31e-01 | 82.0% | 21.1% |
| 4053168 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 29.0 | 2.43e-01 | 82.0% | 27.3% |
| None | — | 0.54 | 45.0 | 3.76e-01 | 92.8% | 78.5% | |
| 3245639 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 36.0 | 3.36e-01 | 91.0% | 55.0% |