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IMGVR_UViG_3300025288_001461-3300025288-Ga0210044_10000075158

Arc-Vir

IMGVR_UViG_3300025288_001461-3300025288-Ga0210044_10000075158

Identity

Kingdom:
archaea

Quality

80.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-69
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.63 38.0 3.24e-01 75.5% 40.7%
3eetA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 3.90e-01 96.2% 56.9%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 48.0 3.79e-01 90.6% 55.3%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 40.0 3.13e-01 90.6% 31.5%
4lvpA00 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.61 45.0 3.46e-01 100.0% 33.9%
2eduA01 1.10.150.280 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AF1531-like domain 0.60 50.0 4.43e-01 98.1% 96.3%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 46.0 3.48e-01 88.7% 100.0%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.58 43.0 3.12e-01 81.1% 99.3%
7dwqL01 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.58 47.0 3.56e-01 88.7% 47.2%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 48.0 3.49e-01 94.3% 58.0%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 46.0 3.92e-01 100.0% 93.9%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 43.0 3.41e-01 96.2% 59.7%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.54 46.0 3.43e-01 100.0% 68.3%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.54 44.0 3.11e-01 96.2% 29.1%
3ftdA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.53 43.0 4.15e-01 100.0% 95.2%
3dnfA02 3.40.50.11270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 3.95e-01 100.0% 83.1%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.31e-01 96.2% 86.4%
4nh0A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 2.88e-01 100.0% 45.9%
6ifsB02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.51 40.0 3.80e-01 100.0% 100.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3675304 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 46.0 3.54e-01 79.2% 42.5%
3244879 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 49.0 4.55e-01 96.2% 88.6%
3742878 243.9.1.2 ↗ a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › Maf1 0.59 50.0 3.48e-01 100.0% 62.6%
4423395 5064.1.1.1 ↗ alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL 0.57 47.0 3.29e-01 90.6% 44.8%
56909 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.55 47.0 3.43e-01 100.0% 34.7%
4300774 4177.1.1.66 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › ATG17_like 0.55 45.0 2.81e-01 94.3% 71.9%
3497189 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 42.0 2.52e-01 88.7% 46.6%
3226790 376.1.1.35 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_14 0.53 39.0 3.23e-01 79.2% 61.1%
3299605 191.1.1.62 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › DUF4378 0.52 42.0 3.42e-01 96.2% 98.3%
4884064 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 44.0 3.47e-01 98.1% 49.2%
3276568 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.51 44.0 2.90e-01 100.0% 39.2%
1318717 3896.1.1.1 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CTP_transf_1 0.51 44.0 2.87e-01 100.0% 21.2%
3448512 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.50 43.0 3.10e-01 96.2% 35.6%
D2 medium residues 71-101
PDB
Domain cluster: representative