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IMGVR_UViG_3300025289_000217-3300025289-Ga0209002_1000451515
Arc-VirIMGVR_UViG_3300025289_000217-3300025289-Ga0209002_1000451515
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 48-144
Domain cluster:
rep: NC_023863.2__YP_009021671.1__CHOED_05__00005__D58-166
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b6zA01 | 2.60.40.3120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 43.0 | 4.16e-01 | 95.9% | 67.3% |
| 4e2gC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 44.0 | 4.06e-01 | 100.0% | 61.9% |
| 1o7dC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 42.0 | 4.41e-01 | 96.9% | 83.1% |
| 1g0dA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 52.0 | 4.62e-01 | 97.9% | 86.1% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 48.0 | 5.09e-01 | 96.9% | 100.0% |
| 5zbeA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 44.0 | 4.31e-01 | 100.0% | 73.8% |
| 2hjiA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 37.0 | 3.16e-01 | 97.9% | 39.7% |
| 3aclA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 35.0 | 3.34e-01 | 97.9% | 50.0% |
| 4xvhA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 42.0 | 4.07e-01 | 100.0% | 70.1% |
| 4fkeA01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.57 | 50.0 | 3.84e-01 | 100.0% | 42.7% |
| 4qmaA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 40.0 | 3.56e-01 | 99.0% | 50.3% |
| 3h7jA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 43.0 | 4.17e-01 | 100.0% | 71.8% |
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.56 | 38.0 | 3.53e-01 | 97.9% | 53.5% |
| 2ww8A02 | 2.60.40.2110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 49.0 | 3.95e-01 | 100.0% | 54.0% |
| 3f1sB03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 41.0 | 3.92e-01 | 93.8% | 66.1% |
| 2opkB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 44.0 | 4.47e-01 | 100.0% | 88.3% |
| 3ebrA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 41.0 | 3.59e-01 | 100.0% | 50.0% |
| 1sefA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 42.0 | 3.98e-01 | 100.0% | 67.2% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.54 | 40.0 | 3.92e-01 | 99.0% | 72.4% |
| 1vphB00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.54 | 47.0 | 4.27e-01 | 100.0% | 96.4% |
| 2vqaC01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.61e-01 | 100.0% | 48.6% |
| 2osxA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 36.0 | 3.59e-01 | 97.9% | 66.7% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 47.0 | 4.21e-01 | 100.0% | 88.7% |
| 4mloA01 | 2.60.120.810 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.59e-01 | 99.0% | 52.2% |
| 4lejA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 44.0 | 3.73e-01 | 100.0% | 53.3% |
| 2p6cA00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.53 | 46.0 | 4.14e-01 | 100.0% | 98.5% |
| 4indA03 | 2.60.120.1330 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 4.41e-01 | 100.0% | 92.4% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 45.0 | 4.06e-01 | 99.0% | 71.0% |
| 1zvfB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 39.0 | 3.36e-01 | 99.0% | 50.0% |
| 3eqeA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 46.0 | 3.90e-01 | 100.0% | 83.3% |
| 1xe0C00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.50 | 44.0 | 4.36e-01 | 97.9% | 98.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604177 | 3386.2.1.0 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 | 0.74 | 51.0 | 5.92e-01 | 94.8% | 100.0% |
| 5053995 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.68 | 44.0 | 4.90e-01 | 100.0% | 85.3% |
| 5027244 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.66 | 40.0 | 4.90e-01 | 93.8% | 98.3% |
| 5056380 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.63 | 43.0 | 4.19e-01 | 100.0% | 63.8% |
| 3938952 | 10.32.1.233 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin | 0.62 | 47.0 | 4.80e-01 | 100.0% | 82.1% |
| 3991253 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.61 | 51.0 | 4.23e-01 | 100.0% | 52.7% |
| 5046044 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 48.0 | 4.46e-01 | 100.0% | 66.4% |
| 2096156 | 4178.1.1.1 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 | 0.60 | 50.0 | 4.33e-01 | 96.9% | 57.8% |
| 3230128 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.60 | 51.0 | 3.87e-01 | 100.0% | 40.5% |
| 3616680 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.60 | 49.0 | 3.73e-01 | 100.0% | 38.2% |
| 3936582 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.60 | 54.0 | 4.07e-01 | 100.0% | 43.2% |
| 3972567 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.60 | 48.0 | 4.97e-01 | 100.0% | 92.2% |
| 2883189 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.59 | 43.0 | 4.66e-01 | 100.0% | 94.9% |
| 4028543 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.58 | 42.0 | 4.64e-01 | 100.0% | 100.0% |
| 4032708 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 41.0 | 4.17e-01 | 99.0% | 75.8% |
| 3974066 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.57 | 43.0 | 3.77e-01 | 100.0% | 51.3% |
| 3404684 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.57 | 45.0 | 3.56e-01 | 100.0% | 39.0% |
| 4010284 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.57 | 48.0 | 4.77e-01 | 99.0% | 85.6% |
| 4962210 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.57 | 45.0 | 4.34e-01 | 100.0% | 74.5% |
| 3973128 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.57 | 40.0 | 3.21e-01 | 99.0% | 36.0% |
| 3869023 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.57 | 51.0 | 3.94e-01 | 100.0% | 47.0% |
| 3855544 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 43.0 | 4.16e-01 | 100.0% | 71.3% |
| 3968004 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.56 | 41.0 | 3.55e-01 | 99.0% | 49.0% |
| 3282039 | 10.2.1.96 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28588 | 0.56 | 49.0 | 4.10e-01 | 99.0% | 59.4% |
| 3945831 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.55 | 41.0 | 3.51e-01 | 100.0% | 46.7% |
| 3183322 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.55 | 47.0 | 3.62e-01 | 100.0% | 40.9% |
| 3665101 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.55 | 39.0 | 4.19e-01 | 97.9% | 90.0% |
| 3952750 | 10.20.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease | 0.55 | 41.0 | 4.09e-01 | 100.0% | 77.0% |
| 3792868 | 11.1.5.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7808 | 0.54 | 49.0 | 4.53e-01 | 100.0% | 86.3% |
| 3509982 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.54 | 49.0 | 3.95e-01 | 100.0% | 52.4% |
| 1779244 | 12.1.1.21 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 | 0.54 | 47.0 | 4.28e-01 | 94.8% | 72.2% |
| 4963723 | 846.1.1.1 ↗ | a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 | 0.54 | 48.0 | 4.26e-01 | 100.0% | 97.9% |
| 5000 | 846.1.1.1 ↗ | a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 | 0.54 | 47.0 | 4.25e-01 | 100.0% | 96.4% |
| 4941672 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.53 | 38.0 | 3.58e-01 | 97.9% | 59.2% |
| 4999 | 846.1.1.1 ↗ | a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 | 0.53 | 47.0 | 4.21e-01 | 100.0% | 97.1% |
| 4966023 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 46.0 | 4.30e-01 | 99.0% | 99.2% |
| 4404708 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.52 | 37.0 | 4.06e-01 | 96.9% | 100.0% |
| 5040562 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 40.0 | 4.20e-01 | 96.9% | 91.1% |
| 3921286 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.52 | 45.0 | 3.88e-01 | 99.0% | 67.9% |
| 5083968 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 45.0 | 4.14e-01 | 94.8% | 100.0% |
| 181540 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.52 | 42.0 | 3.88e-01 | 99.0% | 67.5% |
| 3970328 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.52 | 39.0 | 3.39e-01 | 99.0% | 50.3% |
| 1695947 | 10.2.1.14 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 45.0 | 3.20e-01 | 97.9% | 44.1% |
| 3279676 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.52 | 32.0 | 3.10e-01 | 96.9% | 52.2% |
| 144662 | 10.2.1.31 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin | 0.51 | 43.0 | 4.46e-01 | 97.9% | 100.0% |
| 3600269 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 44.0 | 4.08e-01 | 97.9% | 90.4% |
| 3359356 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.50 | 38.0 | 2.79e-01 | 99.0% | 28.7% |