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IMGVR_UViG_3300025308_000306-3300025308-Ga0209211_100250112
Arc-VirIMGVR_UViG_3300025308_000306-3300025308-Ga0209211_100250112
Identity
- Kingdom:
- archaea
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-82
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gpjA03 | 1.10.1200.70 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glutamyl tRNA-reductase dimerization domain | 0.66 | 52.0 | 5.14e-01 | 86.3% | 81.2% |
| 4mk6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 51.0 | 3.86e-01 | 91.3% | 37.8% |
| 3zeuB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 43.0 | 3.40e-01 | 71.2% | 77.0% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.62 | 42.0 | 4.23e-01 | 72.5% | 69.6% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.62 | 44.0 | 3.77e-01 | 76.2% | 73.7% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 44.0 | 3.30e-01 | 80.0% | 73.7% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.59 | 47.0 | 4.07e-01 | 86.3% | 88.0% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.58 | 48.0 | 4.40e-01 | 96.2% | 86.6% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 46.0 | 3.80e-01 | 88.7% | 61.0% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 47.0 | 3.87e-01 | 91.3% | 70.0% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 46.0 | 3.67e-01 | 91.3% | 63.2% |
| 1li5A02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 40.0 | 3.96e-01 | 82.5% | 69.0% |
| 4jz6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 38.0 | 2.71e-01 | 70.0% | 71.9% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.55 | 44.0 | 4.42e-01 | 90.0% | 85.4% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 45.0 | 3.63e-01 | 90.0% | 67.9% |
| 2xgjA04 | 1.20.1500.20 | Mainly Alpha › Up-down Bundle › YheA-like fold › | 0.54 | 38.0 | 3.22e-01 | 73.8% | 61.4% |
| 4uiqB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 46.0 | 3.75e-01 | 97.5% | 85.6% |
| 2xtzA02 | 1.10.400.10 | Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like | 0.52 | 41.0 | 3.55e-01 | 85.0% | 98.4% |
| 2nsfA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.52 | 42.0 | 3.39e-01 | 88.7% | 44.7% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.51 | 42.0 | 3.41e-01 | 98.8% | 46.1% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 41.0 | 3.55e-01 | 93.8% | 90.6% |
| 3hhcC00 | 1.20.1250.60 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda | 0.50 | 40.0 | 3.24e-01 | 85.0% | 71.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4571267 | 1079.1.1.13 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp | 0.68 | 46.0 | 3.58e-01 | 70.0% | 65.7% |
| 3867152 | 601.1.2.87 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126 | 0.68 | 56.0 | 4.52e-01 | 88.7% | 56.0% |
| 5026085 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.66 | 45.0 | 4.12e-01 | 71.2% | 57.4% |
| 3887645 | 633.21.1.10 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL | 0.66 | 46.0 | 3.92e-01 | 72.5% | 74.6% |
| 3608317 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.65 | 48.0 | 4.88e-01 | 88.7% | 80.0% |
| 4283760 | 1203.1.2.7 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR | 0.61 | 42.0 | 3.51e-01 | 71.2% | 87.1% |
| 3721450 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.61 | 40.0 | 3.30e-01 | 73.8% | 36.0% |
| 3316538 | 5058.1.1.40 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › PF26576 | 0.61 | 45.0 | 4.83e-01 | 87.5% | 90.0% |
| 4010267 | 192.8.1.131 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GNVR | 0.61 | 42.0 | 3.59e-01 | 71.2% | 94.6% |
| 3719895 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.60 | 44.0 | 3.35e-01 | 78.8% | 67.7% |
| 3934625 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.59 | 41.0 | 3.55e-01 | 71.2% | 56.8% |
| 4133359 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.59 | 48.0 | 3.91e-01 | 91.3% | 64.4% |
| 4107135 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.59 | 48.0 | 4.47e-01 | 90.0% | 77.0% |
| 4947563 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.58 | 49.0 | 3.32e-01 | 97.5% | 30.7% |
| 3425757 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 39.0 | 3.03e-01 | 70.0% | 49.1% |
| 5057793 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.57 | 42.0 | 3.41e-01 | 77.5% | 46.0% |
| 3669784 | 1079.1.1.12 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › GDT1 | 0.56 | 44.0 | 3.27e-01 | 85.0% | 70.2% |
| 1298224 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.56 | 46.0 | 3.64e-01 | 91.3% | 62.4% |
| 5015643 | 4025.1.1.0 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit | 0.56 | 45.0 | 3.38e-01 | 88.7% | 86.2% |
| 4034213 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.56 | 43.0 | 4.39e-01 | 87.5% | 83.7% |
| 3668287 | 601.2.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr | 0.56 | 41.0 | 3.69e-01 | 76.2% | 57.3% |
| 4027741 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 50.0 | 3.34e-01 | 100.0% | 65.5% |
| 3999143 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.55 | 43.0 | 3.73e-01 | 85.0% | 95.2% |
| 3235389 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 38.0 | 3.02e-01 | 71.2% | 50.3% |
| 4031203 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.55 | 42.0 | 4.27e-01 | 87.5% | 85.0% |
| 4970712 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 45.0 | 4.07e-01 | 88.7% | 84.8% |
| 4681325 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.54 | 44.0 | 4.41e-01 | 88.7% | 88.7% |
| 3292512 | 150.1.1.2 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › AOX | 0.53 | 45.0 | 3.12e-01 | 92.5% | 32.3% |
| 3994582 | 614.1.1.13 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › SNF | 0.53 | 41.0 | 3.14e-01 | 83.7% | 75.8% |
| 3181595 | 3567.1.1.51 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Fung_rhodopsin | 0.52 | 43.0 | 3.18e-01 | 92.5% | 74.7% |
| 3733339 | 3324.1.1.0 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.51 | 44.0 | 3.89e-01 | 98.8% | 71.2% |
| 3248399 | 3921.1.1.7 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › ALMT | 0.51 | 43.0 | 2.89e-01 | 93.8% | 48.9% |
| 3399286 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.51 | 42.0 | 3.75e-01 | 91.3% | 94.8% |
| 5010956 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 37.0 | 3.53e-01 | 80.0% | 65.3% |
| 3621378 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.50 | 41.0 | 3.32e-01 | 91.3% | 75.8% |