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IMGVR_UViG_3300025312_000096-3300025312-Ga0209321_1000705223
Arc-VirIMGVR_UViG_3300025312_000096-3300025312-Ga0209321_1000705223
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-104
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10765.15 best | Phage_P22_NinX | 37.0 | 4.80e-09 | 81.5% | 50.4% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 56.0 | 5.56e-01 | 86.2% | 98.5% |
| 1sr9A02 | 3.30.160.270 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain | 0.69 | 55.0 | 4.05e-01 | 86.2% | 56.7% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 53.0 | 5.12e-01 | 84.6% | 89.3% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 53.0 | 4.63e-01 | 83.1% | 70.2% |
| 1x49A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 52.0 | 5.13e-01 | 84.6% | 95.7% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 56.0 | 3.64e-01 | 100.0% | 73.4% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 51.0 | 4.52e-01 | 83.1% | 71.3% |
| 1fgsA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.62 | 48.0 | 3.26e-01 | 87.7% | 40.8% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.58 | 43.0 | 4.11e-01 | 81.5% | 97.5% |
| 2hb5A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 44.0 | 3.40e-01 | 81.5% | 60.7% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.58 | 49.0 | 3.52e-01 | 100.0% | 60.4% |
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 36.0 | 3.90e-01 | 80.0% | 83.0% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 34.0 | 3.47e-01 | 81.5% | 60.3% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.56 | 43.0 | 4.08e-01 | 86.2% | 97.5% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 43.0 | 3.79e-01 | 84.6% | 85.9% |
| 5cflA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.56 | 44.0 | 3.46e-01 | 89.2% | 87.1% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 39.0 | 3.47e-01 | 76.9% | 71.6% |
| 2i5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 40.0 | 3.89e-01 | 80.0% | 80.6% |
| 1xmbA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 41.0 | 2.80e-01 | 84.6% | 96.4% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.54 | 37.0 | 3.47e-01 | 73.8% | 86.4% |
| 3buxB03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 38.0 | 3.58e-01 | 78.5% | 84.9% |
| 2mjlA00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.53 | 44.0 | 3.23e-01 | 96.9% | 84.8% |
| 1u08A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 37.0 | 2.91e-01 | 73.8% | 59.9% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.28e-01 | 78.5% | 77.9% |
| 3o46A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 38.0 | 3.52e-01 | 80.0% | 89.3% |
| 1nqlB00 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.51 | 34.0 | 3.75e-01 | 83.1% | 93.8% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 39.0 | 3.33e-01 | 87.7% | 72.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3494433 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.74 | 55.0 | 4.39e-01 | 78.5% | 49.2% |
| 3994593 | 330.1.1.8 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD | 0.72 | 53.0 | 4.97e-01 | 78.5% | 66.3% |
| 3554081 | 330.1.1.8 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD | 0.70 | 55.0 | 5.55e-01 | 84.6% | 100.0% |
| 4319496 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 54.0 | 5.32e-01 | 83.1% | 92.9% |
| 3432658 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 55.0 | 4.86e-01 | 86.2% | 77.9% |
| 5060852 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.69 | 46.0 | 5.22e-01 | 72.3% | 100.0% |
| 3575490 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 44.0 | 4.96e-01 | 73.8% | 93.3% |
| 3718419 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.69 | 61.0 | 4.41e-01 | 100.0% | 84.2% |
| 5062942 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.68 | 45.0 | 4.78e-01 | 72.3% | 81.8% |
| 5038003 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.67 | 45.0 | 4.87e-01 | 72.3% | 90.0% |
| 3825518 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 52.0 | 5.00e-01 | 84.6% | 86.7% |
| 4260316 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.66 | 55.0 | 5.15e-01 | 90.8% | 93.8% |
| 3608583 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.66 | 54.0 | 4.05e-01 | 89.2% | 60.0% |
| 3928223 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 51.0 | 4.60e-01 | 84.6% | 83.3% |
| 3709555 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.64 | 44.0 | 4.62e-01 | 84.6% | 85.5% |
| 3617638 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 54.0 | 4.66e-01 | 96.9% | 75.2% |
| 5023929 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 56.0 | 5.16e-01 | 100.0% | 82.4% |
| 4946613 | 512.1.1.5 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd | 0.63 | 47.0 | 3.42e-01 | 83.1% | 44.0% |
| 3388321 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.61 | 47.0 | 3.44e-01 | 87.7% | 56.0% |
| 6667 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.60 | 43.0 | 4.12e-01 | 76.9% | 97.4% |
| 3629460 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 40.0 | 2.65e-01 | 70.8% | 17.1% |
| 3987365 | 896.1.1.4 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 | 0.59 | 40.0 | 3.76e-01 | 70.8% | 68.8% |
| 3630007 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 44.0 | 3.79e-01 | 84.6% | 84.5% |
| 4014812 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.58 | 37.0 | 3.81e-01 | 72.3% | 68.3% |
| 3740759 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.57 | 42.0 | 4.33e-01 | 81.5% | 93.3% |
| 3710329 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 48.0 | 4.13e-01 | 100.0% | 98.2% |
| 3218417 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 39.0 | 3.62e-01 | 76.9% | 96.5% |
| 5028555 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.54 | 40.0 | 4.07e-01 | 98.5% | 81.5% |
| 3910066 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 39.0 | 3.77e-01 | 84.6% | 73.8% |
| 3216096 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 37.0 | 3.23e-01 | 83.1% | 59.2% |
| 3759995 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 38.0 | 2.63e-01 | 84.6% | 21.2% |
| 4996248 | 331.19.1.0 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains | 0.51 | 44.0 | 4.00e-01 | 100.0% | 80.0% |
| 3241605 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 41.0 | 2.76e-01 | 96.9% | 58.1% |
| 3841512 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 38.0 | 3.66e-01 | 86.2% | 76.2% |