←Back to structures
IMGVR_UViG_3300025312_000374-3300025312-Ga0209321_100186881
Arc-VirIMGVR_UViG_3300025312_000374-3300025312-Ga0209321_100186881
Identity
- Kingdom:
- archaea
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-89
Domain cluster:
rep: IMGVR_UViG_3300025164_000396-3300025164-Ga0209521_100064277__D3-67
D2
medium
residues 149-221
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.76 | 51.0 | 3.87e-01 | 100.0% | 30.4% |
| 6ulwA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.61 | 46.0 | 2.96e-01 | 82.2% | 86.1% |
| 3purA02 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.58 | 51.0 | 3.36e-01 | 95.9% | 69.6% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 31.0 | 2.48e-01 | 71.2% | 23.6% |
| 2yc3A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 41.0 | 2.99e-01 | 76.7% | 53.0% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 39.0 | 3.71e-01 | 74.0% | 64.1% |
| 5ddtA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 40.0 | 2.82e-01 | 83.6% | 62.1% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 2.53e-01 | 78.1% | 88.4% |
| 3d9xA01 | 6.20.50.100 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.51 | 31.0 | 3.53e-01 | 86.3% | 88.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978364 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.70 | 53.0 | 4.53e-01 | 100.0% | 51.3% |
| 2546507 | 69.1.1.2 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint | 0.68 | 63.0 | 4.95e-01 | 100.0% | 65.7% |
| 3599423 | 4043.1.1.0 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase | 0.65 | 49.0 | 4.03e-01 | 79.5% | 90.8% |
| 3712063 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.64 | 48.0 | 3.86e-01 | 79.5% | 87.4% |
| 3592769 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.59 | 51.0 | 3.16e-01 | 94.5% | 42.0% |
| 3961555 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.59 | 44.0 | 3.42e-01 | 80.8% | 84.2% |
| 3459249 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 39.0 | 3.27e-01 | 72.6% | 55.8% |
| 4160981 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.53 | 46.0 | 3.36e-01 | 100.0% | 69.5% |
| 3624908 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 36.0 | 3.40e-01 | 72.6% | 74.4% |