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IMGVR_UViG_3300025312_000973-3300025312-Ga0209321_100183265
Arc-VirIMGVR_UViG_3300025312_000973-3300025312-Ga0209321_100183265
Identity
- Kingdom:
- archaea
Quality
73.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 330-390
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 61.0 | 5.17e-01 | 98.4% | 92.2% |
| 1he8A03 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.70 | 59.0 | 4.81e-01 | 91.8% | 85.6% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.67 | 58.0 | 5.16e-01 | 96.7% | 98.9% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 47.0 | 4.34e-01 | 73.8% | 75.0% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.66 | 56.0 | 4.72e-01 | 98.4% | 79.8% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.65 | 57.0 | 4.89e-01 | 100.0% | 91.8% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.65 | 55.0 | 4.72e-01 | 100.0% | 84.0% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.64 | 49.0 | 4.06e-01 | 85.2% | 53.9% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.64 | 55.0 | 4.97e-01 | 100.0% | 83.5% |
| 5m9dA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 55.0 | 4.23e-01 | 98.4% | 69.6% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 50.0 | 4.40e-01 | 100.0% | 67.3% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 4.09e-01 | 78.7% | 73.8% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 47.0 | 3.93e-01 | 95.1% | 56.0% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.55 | 38.0 | 3.65e-01 | 88.5% | 61.6% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.54 | 39.0 | 3.37e-01 | 80.3% | 45.5% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 41.0 | 3.37e-01 | 83.6% | 60.5% |
| 5c9gF01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 39.0 | 2.87e-01 | 86.9% | 48.3% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 3.73e-01 | 100.0% | 64.4% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.51 | 40.0 | 3.26e-01 | 88.5% | 70.2% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 43.0 | 3.68e-01 | 93.4% | 65.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981499 | 109.4.1.1928 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30223 | 0.77 | 67.0 | 5.50e-01 | 95.1% | 77.1% |
| 3206488 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.73 | 47.0 | 5.18e-01 | 86.9% | 82.0% |
| 3999781 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.72 | 62.0 | 5.31e-01 | 98.4% | 78.0% |
| 5083776 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.69 | 60.0 | 5.22e-01 | 98.4% | 90.5% |
| 3660528 | 109.4.1.1146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB | 0.68 | 59.0 | 3.48e-01 | 98.4% | 12.2% |
| 3328660 | 604.6.1.2 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH | 0.68 | 59.0 | 4.49e-01 | 98.4% | 61.4% |
| 4968762 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.66 | 57.0 | 4.65e-01 | 98.4% | 78.3% |
| 3969942 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.66 | 57.0 | 4.68e-01 | 98.4% | 79.1% |
| 4958742 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 55.0 | 4.48e-01 | 100.0% | 81.6% |
| 4586684 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 54.0 | 4.34e-01 | 96.7% | 73.1% |
| 3595842 | 604.30.1.0 ↗ | alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 | 0.64 | 53.0 | 4.95e-01 | 98.4% | 73.8% |
| 4809785 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.64 | 53.0 | 4.05e-01 | 100.0% | 39.4% |
| 3482349 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.64 | 54.0 | 5.35e-01 | 100.0% | 100.0% |
| 5046834 | 604.5.1.1 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div | 0.63 | 53.0 | 3.74e-01 | 100.0% | 76.3% |
| 3720004 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.63 | 51.0 | 4.70e-01 | 95.1% | 87.1% |
| 4046776 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.62 | 51.0 | 3.74e-01 | 100.0% | 90.3% |
| 3711600 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.62 | 50.0 | 4.60e-01 | 95.1% | 85.9% |
| 5070237 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.61 | 52.0 | 4.61e-01 | 98.4% | 90.0% |
| 3838803 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.60 | 50.0 | 4.91e-01 | 100.0% | 89.2% |
| 3492325 | 109.4.1.602 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dor1 | 0.60 | 51.0 | 3.79e-01 | 100.0% | 45.9% |
| 3288844 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.58 | 43.0 | 3.39e-01 | 82.0% | 54.3% |
| 3997366 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.58 | 49.0 | 3.34e-01 | 100.0% | 42.0% |
| 1826901 | 604.35.1.1 ↗ | alpha bundles › Spectrin repeat-like › Organelle protein MG491 central domain › Organelle protein MG491 central domain › MG491_central | 0.58 | 47.0 | 3.74e-01 | 98.4% | 80.6% |
| 3708551 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.57 | 39.0 | 3.48e-01 | 73.8% | 90.5% |
| 3686422 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.57 | 49.0 | 4.18e-01 | 100.0% | 64.8% |
| 5027625 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.55 | 45.0 | 3.27e-01 | 93.4% | 40.0% |
| 3626769 | 192.5.1.14 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA | 0.54 | 44.0 | 3.96e-01 | 95.1% | 98.9% |
D2
medium
residues 2-97
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.63 | 39.0 | 4.13e-01 | 84.4% | 69.8% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.62 | 44.0 | 4.10e-01 | 74.0% | 84.7% |
| 3we0A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.62 | 53.0 | 4.74e-01 | 95.8% | 79.6% |
| 4jqfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 43.0 | 4.86e-01 | 87.5% | 98.6% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 34.0 | 3.58e-01 | 79.2% | 63.9% |
| 4xeaA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.57 | 46.0 | 3.76e-01 | 89.6% | 78.6% |
| 2p6vA00 | 1.20.120.1110 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain | 0.57 | 46.0 | 4.66e-01 | 89.6% | 100.0% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 36.0 | 3.98e-01 | 89.6% | 84.0% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.56 | 40.0 | 4.38e-01 | 89.6% | 94.7% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 34.0 | 3.77e-01 | 79.2% | 79.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.55 | 41.0 | 3.82e-01 | 88.5% | 62.8% |
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 48.0 | 3.39e-01 | 100.0% | 60.7% |
| 2yusA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 29.0 | 3.62e-01 | 84.4% | 90.6% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.53 | 41.0 | 3.70e-01 | 82.3% | 88.0% |
| 2b0cA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 30.0 | 3.48e-01 | 80.2% | 80.3% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 43.0 | 3.30e-01 | 89.6% | 76.9% |
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.52 | 35.0 | 3.28e-01 | 100.0% | 53.2% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.52 | 38.0 | 4.08e-01 | 89.6% | 98.7% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.51 | 41.0 | 3.66e-01 | 100.0% | 59.2% |
| 8thmA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.51 | 30.0 | 3.26e-01 | 87.5% | 68.8% |
| 3cx5A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 42.0 | 3.36e-01 | 95.8% | 80.7% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 34.0 | 3.65e-01 | 80.2% | 81.5% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 33.0 | 3.55e-01 | 80.2% | 80.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3270068 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 38.0 | 4.07e-01 | 82.3% | 60.0% |
| 3481514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 50.0 | 4.35e-01 | 89.6% | 89.7% |
| 3644409 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.59 | 42.0 | 4.22e-01 | 91.7% | 72.0% |
| 3178086 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.58 | 34.0 | 2.56e-01 | 83.3% | 22.4% |
| 3798724 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.55 | 47.0 | 3.54e-01 | 97.9% | 54.2% |
| 5022298 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.54 | 28.0 | 3.11e-01 | 79.2% | 62.7% |
| 3438235 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.52 | 29.0 | 3.22e-01 | 82.3% | 70.0% |
| 4526572 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.50 | 42.0 | 2.80e-01 | 100.0% | 81.0% |
D3
medium
residues 155-265
Domain cluster:
rep: IMGVR_UViG_3300025313_001466-3300025313-Ga0209431_100090491__D1620-1700