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IMGVR_UViG_3300025314_000846-3300025314-Ga0209323_100031575
Arc-VirIMGVR_UViG_3300025314_000846-3300025314-Ga0209323_100031575
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-75
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fdqA01 | 1.20.120.1030 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain | 0.72 | 49.0 | 4.06e-01 | 70.4% | 41.8% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 55.0 | 4.94e-01 | 85.9% | 76.5% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 51.0 | 4.90e-01 | 80.3% | 91.6% |
| 5wvoC02 | 1.10.10.2230 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.67 | 55.0 | 5.20e-01 | 91.5% | 78.4% |
| 4ragA02 | 1.10.10.430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily | 0.65 | 48.0 | 4.88e-01 | 78.9% | 82.4% |
| 5tgtA02 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 49.0 | 4.09e-01 | 81.7% | 63.4% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 5.00e-01 | 81.7% | 100.0% |
| 1lddA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 4.68e-01 | 80.3% | 91.9% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 41.0 | 4.56e-01 | 76.1% | 94.3% |
| 5al9A01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.60 | 45.0 | 3.66e-01 | 81.7% | 75.9% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.60 | 44.0 | 4.33e-01 | 80.3% | 79.5% |
| 3rr1A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 40.0 | 3.32e-01 | 88.7% | 39.4% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 37.0 | 3.26e-01 | 100.0% | 44.1% |
| 1n1cA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.56 | 38.0 | 3.72e-01 | 97.2% | 62.2% |
| 3efoB01 | 1.20.120.730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain | 0.56 | 40.0 | 3.20e-01 | 77.5% | 66.9% |
| 2fj6A01 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.54 | 37.0 | 3.72e-01 | 71.8% | 70.8% |
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.53 | 38.0 | 3.38e-01 | 78.9% | 73.2% |
| 3l9tA01 | 1.10.1240.70 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.52 | 34.0 | 3.34e-01 | 78.9% | 59.0% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 36.0 | 3.15e-01 | 97.2% | 45.4% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 37.0 | 3.81e-01 | 78.9% | 80.0% |
| 3dxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 37.0 | 3.25e-01 | 81.7% | 70.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973490 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 67.0 | 6.80e-01 | 91.5% | 82.9% |
| 3969958 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 54.0 | 5.65e-01 | 70.4% | 81.5% |
| 3384684 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 58.0 | 5.49e-01 | 87.3% | 88.2% |
| 3404553 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 50.0 | 5.24e-01 | 77.5% | 100.0% |
| 4327631 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 47.0 | 4.51e-01 | 78.9% | 63.5% |
| 5026427 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.63 | 54.0 | 4.99e-01 | 100.0% | 83.2% |
| 4314340 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.62 | 50.0 | 3.68e-01 | 90.1% | 97.1% |
| 3486574 | 101.1.1.50 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Nop16 | 0.62 | 45.0 | 4.76e-01 | 84.5% | 91.7% |
| 1566530 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.61 | 47.0 | 4.52e-01 | 84.5% | 84.0% |
| 4937431 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.60 | 42.0 | 3.28e-01 | 74.6% | 38.2% |
| 5038787 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.59 | 46.0 | 4.09e-01 | 87.3% | 96.4% |
| 3261028 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.59 | 45.0 | 4.29e-01 | 84.5% | 82.4% |
| 4106530 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.59 | 39.0 | 3.42e-01 | 93.0% | 43.9% |
| 3206514 | 192.2.1.6 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_3 | 0.58 | 46.0 | 3.89e-01 | 90.1% | 73.8% |
| 4638127 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.58 | 44.0 | 3.76e-01 | 81.7% | 51.3% |
| 3291450 | 101.1.2.376 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_67 | 0.57 | 45.0 | 4.02e-01 | 98.6% | 58.2% |
| 5022018 | 4973.1.1.0 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core | 0.57 | 40.0 | 4.03e-01 | 78.9% | 75.7% |
| 3741782 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 47.0 | 4.06e-01 | 95.8% | 73.9% |
| 3810942 | 4030.1.1.10 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › PPR | 0.55 | 38.0 | 4.00e-01 | 91.5% | 81.5% |
| 4311026 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 42.0 | 3.53e-01 | 83.1% | 47.2% |
| 3810387 | 563.1.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.53 | 43.0 | 3.97e-01 | 90.1% | 97.9% |
| 3679337 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.53 | 35.0 | 3.22e-01 | 71.8% | 46.7% |
| 3368824 | 5054.1.1.17 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 | 0.53 | 48.0 | 3.36e-01 | 100.0% | 80.0% |
| 3164037 | 3405.1.1.6 ↗ | alpha duplicates or obligate multimers › FkpA dimerization domain-like › FkpA dimerization domain-like › FkpA dimerization domain-like › PF29764 | 0.53 | 43.0 | 3.51e-01 | 88.7% | 79.3% |
| 3532935 | 109.4.1.1965 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28295 | 0.53 | 38.0 | 2.50e-01 | 77.5% | 21.4% |
| 2509188 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.53 | 38.0 | 3.38e-01 | 78.9% | 86.8% |
| 5026703 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.53 | 42.0 | 2.80e-01 | 94.4% | 31.5% |
| 3611798 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 45.0 | 3.15e-01 | 100.0% | 46.1% |
D2
high
residues 80-128
Domain cluster:
rep: IMGVR_UViG_3300025119_000178-3300025119-Ga0209126_10051859__D81-115