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IMGVR_UViG_3300025314_001045-3300025314-Ga0209323_1001195114

Arc-Vir

IMGVR_UViG_3300025314_001045-3300025314-Ga0209323_1001195114

Identity

Kingdom:
archaea

Quality

90.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-97
PDB
Domain cluster: rep: MZ218124.1__QWE49735.1__X__00051__D5-55_120-148
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.77 71.0 5.70e-01 100.0% 56.8%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 54.0 3.77e-01 100.0% 64.4%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 56.0 4.41e-01 100.0% 85.2%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.62 33.0 3.40e-01 97.5% 54.1%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 38.0 3.62e-01 86.3% 53.6%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 35.0 3.46e-01 86.3% 54.5%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 36.0 3.83e-01 100.0% 72.9%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.57 46.0 4.25e-01 86.3% 96.1%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 3.45e-01 97.5% 42.5%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 36.0 3.51e-01 97.5% 56.0%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 42.0 3.35e-01 83.7% 46.4%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 40.0 3.49e-01 100.0% 49.2%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 46.0 3.33e-01 100.0% 76.3%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 37.0 3.34e-01 100.0% 50.5%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 45.0 4.38e-01 100.0% 83.1%
1rzuB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 42.0 2.98e-01 90.0% 98.9%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.48e-01 95.0% 45.7%
3mjgB00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.52 29.0 2.70e-01 88.7% 39.6%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 44.0 3.14e-01 100.0% 98.1%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 39.0 3.36e-01 83.7% 82.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.75e-01 93.8% 88.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137393 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.89 82.0 6.44e-01 100.0% 52.0%
4026643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.78 50.0 4.91e-01 87.5% 61.2%
5072644 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.73 36.0 3.02e-01 100.0% 28.5%
3497120 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 45.0 4.32e-01 95.0% 57.9%
4106397 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 43.0 4.41e-01 92.5% 70.7%
3288884 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 40.0 3.67e-01 100.0% 47.6%
3962202 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.63 46.0 4.11e-01 86.3% 53.9%
3750856 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.62 54.0 3.68e-01 100.0% 62.5%
3390564 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 40.0 3.71e-01 100.0% 50.5%
4608418 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 45.0 4.43e-01 100.0% 74.1%
3342974 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.60 33.0 3.18e-01 98.8% 47.8%
3267754 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.59 46.0 3.91e-01 81.2% 96.0%
3510281 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.58 45.0 3.38e-01 83.7% 48.3%
3964724 3675.1.1.1 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.56 44.0 3.57e-01 100.0% 43.9%
5037441 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 42.0 3.87e-01 86.3% 64.5%
5030959 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 35.0 3.54e-01 86.3% 65.0%
3940690 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 3.75e-01 100.0% 65.7%
4944813 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.52 41.0 3.23e-01 88.7% 60.0%
5046931 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.52 43.0 3.09e-01 93.8% 72.2%
5056110 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 44.0 3.66e-01 100.0% 54.1%
4609098 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 41.0 3.48e-01 98.8% 52.6%
4026812 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 37.0 3.01e-01 97.5% 39.4%
3719897 227.1.1.18 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.50 40.0 3.45e-01 86.3% 79.2%
3322492 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.50 33.0 2.26e-01 92.5% 18.0%
4418351 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.50 37.0 3.38e-01 100.0% 59.0%
3994778 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.47e-01 91.3% 67.6%