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IMGVR_UViG_3300025319_000019-3300025319-Ga0209520_1000003316

Arc-Vir

IMGVR_UViG_3300025319_000019-3300025319-Ga0209520_1000003316

Identity

Kingdom:
archaea

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-30
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pjdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 51.0 3.27e-01 100.0% 29.9%
3ic3A01 3.30.2370.10 Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase 0.64 46.0 3.82e-01 83.3% 46.9%
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.60 44.0 3.81e-01 96.7% 71.0%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 42.0 3.27e-01 83.3% 63.9%
5h71A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 42.0 2.68e-01 100.0% 32.3%
7f0uA01 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.56 39.0 2.95e-01 83.3% 73.7%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 43.0 3.09e-01 96.7% 50.0%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 40.0 2.84e-01 100.0% 44.2%
2p3yA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 38.0 3.85e-01 100.0% 93.3%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 40.0 2.35e-01 100.0% 20.8%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 39.0 2.89e-01 93.3% 74.3%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.51 36.0 2.79e-01 100.0% 42.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970206 857.1.1.0 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like 0.68 48.0 3.95e-01 83.3% 78.5%
5001426 2002.1.1.23 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.62 47.0 2.73e-01 90.0% 78.9%
4999971 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 46.0 3.41e-01 100.0% 30.0%
3781331 602.2.1.0 ↗ alpha arrays › L-aspartase middle domain-like › RNA-binding protein She2p › RNA-binding protein She2p 0.59 44.0 2.59e-01 83.3% 66.0%
5040199 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.59 45.0 2.86e-01 96.7% 25.1%
3412818 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.59 43.0 4.28e-01 100.0% 82.9%
5064814 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.58 43.0 2.75e-01 100.0% 14.8%
3928014 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 41.0 4.03e-01 90.0% 57.1%
3257763 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 41.0 2.32e-01 86.7% 7.1%
3666571 109.4.1.1993 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif, TPR_24 0.55 38.0 2.07e-01 86.7% 3.7%
3727485 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 42.0 2.37e-01 100.0% 17.7%
4936323 4029.1.1.0 ↗ a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like 0.53 40.0 3.96e-01 93.3% 88.6%
4990295 2003.1.1.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 0.53 39.0 2.69e-01 93.3% 24.3%
3973557 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 39.0 2.81e-01 96.7% 23.6%
5017508 4029.1.1.0 ↗ a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like 0.53 42.0 4.07e-01 93.3% 85.7%
3782781 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 41.0 3.86e-01 96.7% 90.0%
4941687 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 2.91e-01 96.7% 92.4%
3884630 358.1.1.1 ↗ a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR 0.52 35.0 2.69e-01 90.0% 74.5%
4961157 4029.1.1.1 ↗ a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › Sirohm_synth_M 0.51 40.0 3.48e-01 93.3% 58.0%
4424904 4029.1.1.0 ↗ a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like 0.50 39.0 3.56e-01 93.3% 66.7%