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IMGVR_UViG_3300025319_000019-3300025319-Ga0209520_100000332

Arc-Vir

IMGVR_UViG_3300025319_000019-3300025319-Ga0209520_100000332

Quality

84.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-58
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.76 58.0 5.13e-01 100.0% 57.1%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.98e-01 100.0% 82.5%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.73 55.0 4.74e-01 85.2% 52.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.77e-01 100.0% 73.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 64.0 5.82e-01 100.0% 77.8%
2bg9A01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.66 51.0 3.42e-01 83.3% 52.4%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 58.0 3.89e-01 100.0% 40.9%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 4.76e-01 100.0% 58.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.63 53.0 5.11e-01 100.0% 82.5%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.63 40.0 3.31e-01 100.0% 33.7%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.62 53.0 4.14e-01 98.1% 43.0%
4f8bA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.61 48.0 3.68e-01 90.7% 64.7%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 47.0 3.93e-01 90.7% 48.9%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.61 39.0 3.58e-01 77.8% 49.3%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.20e-01 100.0% 66.7%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 47.0 3.70e-01 87.0% 55.0%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 49.0 3.64e-01 96.3% 47.3%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 3.47e-01 100.0% 35.9%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.91e-01 79.6% 63.2%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.01e-01 100.0% 92.6%
1mo7A00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 43.0 2.89e-01 81.5% 45.1%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 48.0 3.53e-01 98.1% 59.2%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 43.0 4.26e-01 100.0% 78.6%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 44.0 2.93e-01 96.3% 20.7%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.23e-01 87.0% 71.2%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 3.46e-01 100.0% 52.8%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 40.0 2.86e-01 77.8% 82.7%
2mmpA00 3.30.160.830 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 42.0 3.77e-01 83.3% 75.3%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 3.34e-01 100.0% 72.9%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 46.0 3.48e-01 100.0% 89.8%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.60e-01 100.0% 91.4%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 48.0 3.47e-01 100.0% 43.8%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 40.0 4.15e-01 98.1% 92.2%
1u2eA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 2.93e-01 98.1% 32.9%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 42.0 4.27e-01 100.0% 94.1%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 2.54e-01 92.6% 21.6%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.53 43.0 3.26e-01 92.6% 56.6%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.53 42.0 2.88e-01 100.0% 29.7%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.02e-01 92.6% 85.8%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 2.86e-01 94.4% 93.3%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 44.0 2.76e-01 98.1% 29.6%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 40.0 3.35e-01 85.2% 74.7%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.76e-01 100.0% 25.2%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 38.0 3.84e-01 100.0% 88.5%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.04e-01 100.0% 74.4%
3wi7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.55e-01 87.0% 30.9%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.51 42.0 3.29e-01 100.0% 43.4%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 37.0 3.64e-01 96.3% 75.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 39.0 3.84e-01 100.0% 83.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930846 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.79 56.0 5.38e-01 74.1% 68.3%
3392837 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.77 58.0 3.21e-01 81.5% 6.9%
5037223 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.76 56.0 5.48e-01 79.6% 71.7%
3582834 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.76 67.0 5.54e-01 100.0% 55.8%
5062756 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 63.0 6.59e-01 100.0% 98.0%
5061113 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.75 62.0 6.24e-01 100.0% 89.1%
3651207 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.75 52.0 3.33e-01 96.3% 15.4%
None 0.75 58.0 3.21e-01 83.3% 6.9%
3591052 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 49.0 4.59e-01 72.2% 55.4%
4968081 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.75 62.0 6.19e-01 100.0% 89.1%
4932581 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.72 57.0 5.34e-01 85.2% 70.8%
3709896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.39e-01 100.0% 61.2%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.71 63.0 5.61e-01 100.0% 70.7%
4073608 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.70 62.0 4.30e-01 100.0% 71.1%
3249895 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 58.0 5.33e-01 96.3% 77.1%
4980017 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.67 45.0 3.14e-01 74.1% 21.7%
5000502 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.64 57.0 4.89e-01 100.0% 77.6%
3452728 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.63 56.0 3.75e-01 100.0% 40.5%
3511636 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 50.0 3.17e-01 98.1% 17.5%
3999482 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.63 56.0 4.42e-01 100.0% 68.2%
3415831 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.63 56.0 4.29e-01 100.0% 68.3%
3931053 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.62 55.0 4.53e-01 100.0% 80.0%
4932514 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 54.0 4.22e-01 100.0% 54.2%
4505258 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 52.0 4.06e-01 92.6% 47.8%
4452931 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.61 43.0 3.55e-01 75.9% 40.0%
3261801 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 47.0 3.07e-01 96.3% 18.0%
3355345 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 4.34e-01 88.9% 65.7%
3428734 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 49.0 2.92e-01 96.3% 12.0%
3994731 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.61 46.0 3.27e-01 92.6% 25.6%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.60 51.0 3.76e-01 100.0% 65.2%
3990730 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.59 44.0 2.60e-01 100.0% 9.6%
3227459 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.59 47.0 3.05e-01 96.3% 17.6%
3202278 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 52.0 3.64e-01 100.0% 55.9%
3472188 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 46.0 2.93e-01 100.0% 19.2%
3224924 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 40.0 3.07e-01 88.9% 28.9%
3276560 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.58 50.0 4.10e-01 98.1% 53.0%
4260969 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 46.0 3.51e-01 88.9% 57.8%
None 0.58 45.0 2.84e-01 87.0% 41.9%
3935930 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 49.0 3.30e-01 98.1% 24.2%
3684111 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.58 48.0 3.04e-01 98.1% 17.6%
3610728 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.57 46.0 2.93e-01 98.1% 16.1%
3464137 4.1.1.152 beta barrels › SH3 › SH3 › SH3 › DUF1262 0.57 47.0 3.47e-01 100.0% 55.2%
3994973 101.1.12.3 alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.57 49.0 3.75e-01 100.0% 85.4%
3320319 4.1.1.152 beta barrels › SH3 › SH3 › SH3 › DUF1262 0.57 47.0 3.61e-01 100.0% 42.1%
4030358 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 48.0 3.11e-01 98.1% 22.0%
3960836 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.56 45.0 3.06e-01 88.9% 39.0%
3278140 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 49.0 3.88e-01 100.0% 77.3%
5080798 4.17.1.0 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.55 48.0 4.38e-01 100.0% 76.0%
4940057 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 3.93e-01 83.3% 83.1%
3834458 5084.1.1.27 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › DUF2921_N 0.55 45.0 3.33e-01 100.0% 54.7%
4025174 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 48.0 3.28e-01 98.1% 29.5%
3291521 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 46.0 3.42e-01 96.3% 57.3%
5062193 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.54 47.0 3.74e-01 100.0% 89.1%
4963204 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 46.0 3.23e-01 100.0% 34.6%
3691196 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 43.0 2.79e-01 96.3% 18.2%
4040055 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.52 42.0 4.17e-01 100.0% 93.1%
3297629 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 40.0 3.70e-01 94.4% 67.5%
3591891 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 40.0 2.71e-01 94.4% 21.9%
3694763 375.1.1.222 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 0.50 41.0 3.19e-01 94.4% 70.0%