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IMGVR_UViG_3300025319_000019-3300025319-Ga0209520_100000335

Arc-Vir

IMGVR_UViG_3300025319_000019-3300025319-Ga0209520_100000335

Quality

71.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xzjA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.74 51.0 3.61e-01 72.2% 94.8%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.73 57.0 5.16e-01 83.3% 80.0%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.71 50.0 3.44e-01 73.6% 41.4%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 43.0 5.33e-01 75.0% 100.0%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.69 49.0 5.28e-01 80.6% 85.7%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.69 48.0 3.43e-01 72.2% 99.1%
2hz7A05 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.66 52.0 4.28e-01 84.7% 87.5%
4h3sA02 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.65 51.0 4.32e-01 84.7% 80.8%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 50.0 4.15e-01 83.3% 58.9%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 45.0 3.29e-01 73.6% 98.1%
1qtqA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.65 50.0 4.41e-01 84.7% 87.9%
2zo4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 44.0 2.99e-01 73.6% 78.2%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 47.0 3.87e-01 84.7% 63.4%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 43.0 2.83e-01 77.8% 22.4%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 42.0 2.87e-01 75.0% 59.1%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.58 43.0 4.18e-01 77.8% 78.5%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 45.0 3.74e-01 83.3% 49.6%
2b0vA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 43.0 3.49e-01 83.3% 58.1%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.57 34.0 3.90e-01 72.2% 89.4%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 39.0 2.59e-01 70.8% 21.5%
3r2uB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 40.0 2.79e-01 75.0% 65.5%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 41.0 2.76e-01 77.8% 23.7%
4ad9A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 40.0 2.91e-01 75.0% 80.4%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 38.0 3.03e-01 70.8% 60.8%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 39.0 2.68e-01 73.6% 67.7%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.56 40.0 3.70e-01 75.0% 68.9%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 42.0 4.13e-01 81.9% 100.0%
5wcmA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 43.0 2.99e-01 88.9% 96.6%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 42.0 2.85e-01 86.1% 50.3%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 44.0 3.60e-01 90.3% 100.0%
6n36A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 39.0 2.69e-01 76.4% 69.1%
1nlrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.54 37.0 2.64e-01 84.7% 23.0%
2jemA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.54 37.0 2.61e-01 72.2% 53.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 31.0 3.10e-01 81.9% 56.8%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 3.04e-01 77.8% 83.1%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 39.0 3.18e-01 84.7% 43.3%
2c1lA02 2.40.330.30 Mainly Beta › Beta Barrel › At1g16640 B3 domain › 0.51 42.0 3.25e-01 91.7% 40.6%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 42.0 3.94e-01 100.0% 98.9%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 42.0 3.54e-01 93.1% 97.7%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 3.93e-01 91.7% 100.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015084 239.1.1.7 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.78 58.0 6.27e-01 83.3% 93.3%
5042402 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.76 58.0 6.34e-01 80.6% 98.3%
4966140 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.75 58.0 5.22e-01 83.3% 61.1%
5045021 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.75 56.0 6.05e-01 83.3% 95.0%
4438870 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.74 58.0 4.99e-01 83.3% 70.9%
4968500 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.74 53.0 5.60e-01 83.3% 85.7%
4669977 239.2.1.0 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like 0.74 57.0 4.96e-01 83.3% 69.1%
5075839 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.73 57.0 4.65e-01 83.3% 58.5%
4947178 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.73 57.0 4.64e-01 83.3% 58.5%
4964644 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.73 52.0 5.77e-01 83.3% 98.2%
3573551 4.6.1.5 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.73 56.0 5.31e-01 90.3% 69.4%
4542419 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.73 57.0 4.75e-01 83.3% 62.5%
4097972 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.72 56.0 4.79e-01 83.3% 66.1%
3852128 4.6.1.5 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.71 55.0 5.19e-01 87.5% 69.4%
3802388 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.71 64.0 6.16e-01 100.0% 97.6%
4157545 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.71 49.0 3.83e-01 72.2% 66.7%
4276265 6012.1.1.0 few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI 0.70 40.0 5.00e-01 80.6% 100.0%
3266010 4.6.1.5 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.70 55.0 5.58e-01 87.5% 85.7%
4947785 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.70 54.0 5.59e-01 83.3% 87.0%
3342335 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.69 54.0 4.85e-01 84.7% 86.0%
3390160 4.6.1.5 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.68 55.0 5.75e-01 91.7% 95.4%
3975275 1.1.13.15 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.67 52.0 4.72e-01 83.3% 87.4%
4084964 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.66 51.0 4.36e-01 84.7% 79.2%
4047331 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.65 51.0 4.58e-01 84.7% 63.0%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 49.0 4.30e-01 83.3% 95.5%
3932999 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.64 47.0 3.02e-01 77.8% 20.6%
3923528 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.63 47.0 3.06e-01 77.8% 23.4%
4000896 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 44.0 2.84e-01 77.8% 21.5%
None 0.59 43.0 2.87e-01 77.8% 23.3%
3738244 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 2.88e-01 77.8% 24.1%
3925961 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 2.79e-01 76.4% 21.6%
4654417 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.59 45.0 4.07e-01 83.3% 81.0%
3853555 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 2.81e-01 77.8% 21.4%
3584992 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 3.05e-01 77.8% 30.2%
3228872 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 2.79e-01 77.8% 20.9%
3923171 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 2.84e-01 77.8% 23.7%
3232425 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 43.0 2.78e-01 77.8% 22.7%
3614964 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.58 44.0 3.32e-01 80.6% 58.3%
3214110 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 43.0 2.74e-01 77.8% 18.8%
3799750 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 42.0 3.10e-01 77.8% 35.5%
3901130 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 42.0 2.74e-01 77.8% 20.6%
3925321 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 41.0 2.73e-01 77.8% 21.7%
None 0.56 41.0 2.75e-01 77.8% 22.0%
3411753 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 40.0 2.69e-01 77.8% 23.0%
3481161 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.55 40.0 2.74e-01 80.6% 23.8%
3507402 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 38.0 2.58e-01 79.2% 23.2%
5029710 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 37.0 2.53e-01 73.6% 92.5%
3512196 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 38.0 2.55e-01 79.2% 21.9%
3509161 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.52 37.0 2.55e-01 77.8% 22.8%
3624495 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 38.0 2.56e-01 84.7% 43.0%