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IMGVR_UViG_3300025319_000987-3300025319-Ga0209520_100076921
Arc-VirIMGVR_UViG_3300025319_000987-3300025319-Ga0209520_100076921
Identity
- Kingdom:
- archaea
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-34
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q7sA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.65 | 46.0 | 3.22e-01 | 75.0% | 26.5% |
| 1s3jA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 3.77e-01 | 81.2% | 42.2% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.62 | 44.0 | 3.09e-01 | 75.0% | 24.1% |
| 4xaaA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.61 | 47.0 | 2.94e-01 | 93.8% | 76.5% |
| 6fjxA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.61 | 45.0 | 2.76e-01 | 90.6% | 77.5% |
| 2py6A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 43.0 | 2.81e-01 | 84.4% | 28.9% |
| 4jz6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.60 | 46.0 | 2.83e-01 | 93.8% | 48.6% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 45.0 | 3.54e-01 | 100.0% | 38.9% |
| 4ywzB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 43.0 | 3.03e-01 | 93.8% | 43.2% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 42.0 | 3.52e-01 | 96.9% | 42.5% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 45.0 | 3.44e-01 | 93.8% | 70.3% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 41.0 | 2.96e-01 | 100.0% | 49.3% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 45.0 | 2.88e-01 | 93.8% | 43.7% |
| 2pokA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 43.0 | 2.62e-01 | 100.0% | 19.4% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 40.0 | 3.18e-01 | 100.0% | 30.2% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 39.0 | 3.09e-01 | 100.0% | 29.4% |
| 3bjoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.05e-01 | 84.4% | 68.9% |
| 3mcpA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 41.0 | 2.54e-01 | 84.4% | 40.2% |
| 3ke2B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 3.40e-01 | 100.0% | 65.6% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 3.20e-01 | 100.0% | 66.7% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.56 | 37.0 | 3.48e-01 | 84.4% | 50.9% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.55 | 44.0 | 2.57e-01 | 100.0% | 94.1% |
| 2f4wB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 43.0 | 2.86e-01 | 93.8% | 65.1% |
| 1x23B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 40.0 | 2.67e-01 | 71.9% | 18.4% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.55 | 45.0 | 3.04e-01 | 100.0% | 26.9% |
| 4g1uD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 39.0 | 2.49e-01 | 100.0% | 51.8% |
| 1ydmB00 | 3.40.50.10420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like | 0.54 | 43.0 | 2.77e-01 | 96.9% | 30.2% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 2.68e-01 | 96.9% | 45.7% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.53 | 42.0 | 3.09e-01 | 87.5% | 71.7% |
| 2bjiA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 44.0 | 2.98e-01 | 100.0% | 72.9% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.18e-01 | 93.8% | 35.6% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.23e-01 | 96.9% | 50.6% |
| 2dqlA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.00e-01 | 96.9% | 61.7% |
| 1dekA02 | 1.10.238.70 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.53 | 43.0 | 2.97e-01 | 96.9% | 59.0% |
| 4asnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.02e-01 | 90.6% | 80.0% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.53 | 42.0 | 2.54e-01 | 100.0% | 84.9% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.19e-01 | 96.9% | 40.0% |
| 4bgpA01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.52 | 39.0 | 2.77e-01 | 96.9% | 87.4% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.05e-01 | 96.9% | 33.3% |
| 3bz6A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.34e-01 | 96.9% | 55.1% |
| 1bf5A04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 39.0 | 2.86e-01 | 93.8% | 71.7% |
| 3llcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 37.0 | 2.28e-01 | 84.4% | 85.4% |
| 3wasA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 41.0 | 2.38e-01 | 100.0% | 28.5% |
| 8agaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 2.95e-01 | 96.9% | 27.8% |
| 4at7A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 39.0 | 2.59e-01 | 87.5% | 53.3% |
| 3c18A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.22e-01 | 81.2% | 49.1% |
| 2p4wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.03e-01 | 96.9% | 35.9% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 39.0 | 2.49e-01 | 96.9% | 63.9% |
| 2k6vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 39.0 | 2.59e-01 | 93.8% | 57.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013384 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.68 | 47.0 | 3.03e-01 | 71.9% | 35.3% |
| 3943676 | 3355.1.1.0 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter | 0.67 | 53.0 | 2.99e-01 | 100.0% | 69.6% |
| 1901369 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.63 | 50.0 | 3.04e-01 | 100.0% | 50.6% |
| 1875688 | 4019.1.1.6 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.61 | 46.0 | 3.17e-01 | 96.9% | 32.2% |
| 3787273 | 2485.1.1.20 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like | 0.61 | 42.0 | 3.39e-01 | 78.1% | 42.3% |
| 3669436 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.61 | 44.0 | 3.44e-01 | 84.4% | 38.8% |
| 3783767 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.59 | 41.0 | 2.49e-01 | 71.9% | 9.3% |
| 4970460 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.59 | 45.0 | 2.78e-01 | 100.0% | 55.7% |
| 3272269 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 44.0 | 2.75e-01 | 87.5% | 31.8% |
| 1150060 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.58 | 40.0 | 2.62e-01 | 100.0% | 42.6% |
| 3719487 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.57 | 43.0 | 2.59e-01 | 90.6% | 25.2% |
| 4028765 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 39.0 | 3.18e-01 | 71.9% | 38.7% |
| 5004889 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.57 | 39.0 | 2.36e-01 | 71.9% | 41.5% |
| 3940472 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.57 | 46.0 | 2.97e-01 | 93.8% | 63.1% |
| 3493298 | 101.1.2.106 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 | 0.56 | 40.0 | 2.66e-01 | 81.2% | 17.6% |
| 3471711 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.55 | 43.0 | 2.69e-01 | 93.8% | 28.0% |
| 3939572 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.55 | 39.0 | 2.45e-01 | 75.0% | 11.1% |
| 4961841 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.55 | 39.0 | 2.66e-01 | 71.9% | 19.2% |
| 3421312 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.54 | 40.0 | 3.39e-01 | 96.9% | 62.9% |
| 3818705 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.54 | 42.0 | 3.37e-01 | 100.0% | 55.0% |
| 5078403 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.54 | 43.0 | 3.37e-01 | 93.8% | 48.0% |
| 3228492 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 40.0 | 3.02e-01 | 90.6% | 30.6% |
| 3299168 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.54 | 41.0 | 3.31e-01 | 100.0% | 60.0% |
| 5077968 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.54 | 44.0 | 3.05e-01 | 100.0% | 29.6% |
| 2600 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.54 | 40.0 | 2.74e-01 | 93.8% | 20.5% |
| 3531794 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 45.0 | 2.82e-01 | 100.0% | 53.0% |
| 5075945 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 40.0 | 3.28e-01 | 87.5% | 95.7% |
| 2440217 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.53 | 39.0 | 3.78e-01 | 87.5% | 100.0% |
| 164542 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 41.0 | 3.00e-01 | 96.9% | 61.7% |
| 5061675 | 101.1.2.214 ↗ | alpha arrays › HTH › HTH › winged helix domain › DnaD_N | 0.53 | 42.0 | 3.57e-01 | 93.8% | 53.3% |
| 2324001 | 101.1.2.453 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_DnaB | 0.53 | 37.0 | 2.67e-01 | 93.8% | 37.3% |
| 4944735 | 101.1.2.542 ↗ | alpha arrays › HTH › HTH › winged helix domain › ATPase_2 | 0.52 | 41.0 | 2.91e-01 | 96.9% | 30.4% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.52 | 37.0 | 3.20e-01 | 93.8% | 45.7% |
| 3617655 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.52 | 38.0 | 2.39e-01 | 96.9% | 49.1% |
| 3315481 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.52 | 39.0 | 2.88e-01 | 100.0% | 41.7% |
| 5074870 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.03e-01 | 100.0% | 54.0% |
| 4957195 | 101.1.2.892 ↗ | alpha arrays › HTH › HTH › winged helix domain › ArsR | 0.52 | 42.0 | 2.99e-01 | 93.8% | 56.2% |
| 3479024 | 263.1.1.0 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like | 0.51 | 39.0 | 3.52e-01 | 100.0% | 67.3% |
| 3312089 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 41.0 | 3.03e-01 | 96.9% | 38.0% |
| 5057549 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 40.0 | 2.77e-01 | 93.8% | 28.8% |
| 4955415 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.07e-01 | 100.0% | 62.9% |
| 5014787 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.14e-01 | 100.0% | 71.8% |
| 5082589 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.51 | 42.0 | 3.18e-01 | 96.9% | 42.5% |
| 3650217 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.51 | 41.0 | 3.22e-01 | 96.9% | 54.1% |
| 3915100 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.50 | 39.0 | 2.64e-01 | 93.8% | 54.4% |
| 4988082 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.18e-01 | 93.8% | 55.7% |
| 1205110 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.50 | 36.0 | 3.40e-01 | 84.4% | 88.9% |