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IMGVR_UViG_3300025322_000234-3300025322-Ga0209641_1000309213

Arc-Vir

IMGVR_UViG_3300025322_000234-3300025322-Ga0209641_1000309213

Quality

72.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.79 63.0 4.49e-01 100.0% 30.4%
3f8kA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.72 60.0 4.39e-01 100.0% 34.4%
1y9kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 60.0 4.63e-01 100.0% 44.2%
1j7xA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.68 55.0 3.61e-01 91.7% 21.5%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 56.0 4.53e-01 100.0% 53.8%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.65 54.0 3.77e-01 91.7% 36.3%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 52.0 3.75e-01 100.0% 90.0%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.62 41.0 2.54e-01 100.0% 10.9%
1ypzF01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 49.0 3.63e-01 93.8% 34.1%
3iteB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.61 48.0 2.91e-01 95.8% 25.2%
3iwgA01 3.40.630.80 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.60 48.0 3.72e-01 100.0% 41.5%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 43.0 3.89e-01 81.2% 90.1%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.78e-01 93.8% 97.1%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.58 47.0 4.09e-01 100.0% 66.7%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 44.0 2.69e-01 89.6% 71.5%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 47.0 3.28e-01 100.0% 83.4%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 39.0 2.99e-01 75.0% 64.2%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.57 49.0 4.09e-01 100.0% 57.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 46.0 3.64e-01 100.0% 93.2%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.56 45.0 3.68e-01 100.0% 84.1%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 42.0 2.57e-01 87.5% 21.9%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.56 45.0 3.54e-01 95.8% 75.4%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.56 47.0 3.77e-01 100.0% 47.4%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 42.0 2.75e-01 85.4% 17.9%
4n0rA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 42.0 2.64e-01 89.6% 27.1%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.22e-01 97.9% 85.9%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.53e-01 100.0% 81.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.56e-01 87.5% 100.0%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.54 44.0 3.09e-01 95.8% 82.3%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 47.0 4.15e-01 100.0% 93.1%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 48.0 3.49e-01 100.0% 39.7%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 42.0 3.06e-01 95.8% 32.7%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.53 42.0 3.38e-01 91.7% 61.2%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.04e-01 100.0% 75.5%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.20e-01 93.8% 93.0%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.58e-01 87.5% 71.4%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 42.0 2.86e-01 89.6% 92.8%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.34e-01 97.9% 80.0%
1w2wB00 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.52 36.0 2.39e-01 95.8% 17.8%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.51 43.0 3.10e-01 97.9% 41.9%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 41.0 3.65e-01 97.9% 63.6%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.55e-01 87.5% 76.7%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.06e-01 91.7% 84.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3673228 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.79 68.0 4.46e-01 100.0% 26.0%
3602012 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.72 51.0 4.58e-01 100.0% 52.9%
3284762 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.72 48.0 3.39e-01 70.8% 66.9%
4999326 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.70 56.0 4.01e-01 100.0% 29.2%
3175463 7026.1.1.5 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.69 46.0 3.02e-01 70.8% 26.5%
4347105 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.68 55.0 4.34e-01 100.0% 40.9%
5081301 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.68 60.0 3.51e-01 100.0% 70.3%
3281747 213.5.1.1 a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like 0.68 55.0 4.47e-01 100.0% 74.3%
4971670 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.66 53.0 3.93e-01 100.0% 32.6%
5030513 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.65 53.0 3.83e-01 100.0% 29.7%
3299665 244.1.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.65 56.0 3.48e-01 100.0% 36.4%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 48.0 3.41e-01 81.2% 53.1%
3580193 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 56.0 3.67e-01 100.0% 65.9%
3795541 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 4.28e-01 100.0% 87.2%
3915542 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.63 48.0 4.15e-01 100.0% 51.2%
3708219 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.63 48.0 4.29e-01 100.0% 57.1%
3576577 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 46.0 4.12e-01 81.2% 85.3%
3443138 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.63 51.0 3.20e-01 100.0% 18.2%
3246494 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.63 54.0 3.40e-01 97.9% 28.6%
4315251 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 42.0 3.67e-01 79.2% 45.3%
3741825 10.12.1.12 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.61 48.0 2.97e-01 100.0% 14.2%
4241750 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.60 51.0 3.44e-01 100.0% 35.5%
3650011 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.60 48.0 3.04e-01 100.0% 17.2%
3506540 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.60 48.0 3.69e-01 89.6% 86.1%
3803703 211.1.1.40 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Peptidase_S10 0.60 48.0 3.66e-01 100.0% 38.8%
3935038 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.59 52.0 4.42e-01 100.0% 68.4%
1841016 79.1.1.9 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.59 39.0 2.54e-01 77.1% 14.0%
5029710 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 52.0 3.23e-01 100.0% 29.8%
2417913 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.59 39.0 2.32e-01 77.1% 8.3%
4002892 109.4.1.2561 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FATC 0.58 41.0 2.33e-01 100.0% 6.1%
3455792 5.1.4.319 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.58 43.0 2.63e-01 81.2% 17.5%
3480718 5.1.4.229 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.58 50.0 2.92e-01 100.0% 16.8%
4302456 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.57 48.0 4.02e-01 97.9% 63.3%
3469923 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.71e-01 89.6% 93.7%
3995515 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 49.0 3.04e-01 100.0% 32.1%
3917386 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.57 47.0 3.32e-01 100.0% 27.4%
3214162 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 45.0 4.20e-01 87.5% 85.0%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.56 49.0 2.70e-01 100.0% 9.2%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.56 49.0 3.68e-01 100.0% 89.2%
3786015 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 48.0 2.68e-01 100.0% 9.9%
3256843 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 46.0 3.62e-01 93.8% 77.1%
3742004 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.55 47.0 3.56e-01 100.0% 88.8%
4051690 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.55 47.0 3.72e-01 100.0% 91.4%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.78e-01 79.2% 98.3%
3788142 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 43.0 3.35e-01 93.8% 80.0%
3263649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.34e-01 93.8% 66.9%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 43.0 2.55e-01 100.0% 14.2%
3874175 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.38e-01 95.8% 78.4%
3295440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.25e-01 100.0% 68.5%
3520119 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.53 46.0 2.74e-01 100.0% 17.0%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 42.0 3.48e-01 89.6% 83.3%
3519934 5.1.4.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.53 47.0 2.98e-01 100.0% 29.1%
3570692 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 44.0 3.44e-01 97.9% 87.8%
3303184 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 41.0 2.52e-01 97.9% 28.5%
3603146 2008.1.1.95 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.52 44.0 2.80e-01 100.0% 21.1%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.64e-01 97.9% 100.0%
3364309 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.51 42.0 3.20e-01 100.0% 78.5%
2388239 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.51 41.0 3.55e-01 87.5% 76.7%
3552888 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.17e-01 93.8% 80.8%
3270836 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 43.0 3.32e-01 100.0% 80.0%
3823929 220.1.1.163 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.50 39.0 3.10e-01 93.8% 74.2%
3719687 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 3.49e-01 89.6% 74.7%