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IMGVR_UViG_3300025324_000177-3300025324-Ga0209640_100304311
Arc-VirIMGVR_UViG_3300025324_000177-3300025324-Ga0209640_100304311
Identity
- Kingdom:
- archaea
Quality
92.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-63
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 4.32e-01 | 100.0% | 68.2% |
| 6k93A00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.58 | 47.0 | 3.12e-01 | 89.8% | 35.6% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.28e-01 | 79.7% | 39.3% |
| 5ncsA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.56 | 35.0 | 2.69e-01 | 98.3% | 25.9% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.55 | 39.0 | 3.92e-01 | 96.6% | 72.6% |
| 7uqyB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 43.0 | 2.98e-01 | 91.5% | 49.5% |
| 1gzeA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.53 | 45.0 | 3.12e-01 | 96.6% | 43.0% |
| 4n0rA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 40.0 | 2.57e-01 | 86.4% | 50.3% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 36.0 | 2.74e-01 | 74.6% | 56.1% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.17e-01 | 94.9% | 53.4% |
| 6u1vD02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.51 | 38.0 | 3.18e-01 | 83.1% | 92.6% |
| 2q2tA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 38.0 | 3.23e-01 | 84.7% | 97.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4555816 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 48.0 | 4.20e-01 | 96.6% | 45.9% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 46.0 | 4.15e-01 | 100.0% | 47.5% |
| 5034040 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 44.0 | 4.56e-01 | 93.2% | 67.3% |
| 4559371 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 45.0 | 4.43e-01 | 96.6% | 61.9% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.68 | 52.0 | 5.20e-01 | 91.5% | 83.1% |
| 3914796 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.64 | 57.0 | 4.64e-01 | 100.0% | 86.4% |
| 3602921 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 38.0 | 3.97e-01 | 86.4% | 63.6% |
| 3596994 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 39.0 | 4.16e-01 | 100.0% | 74.0% |
| 4913409 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.60 | 41.0 | 3.44e-01 | 100.0% | 40.2% |
| 5045383 | 4052.1.1.1 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_M | 0.57 | 42.0 | 3.18e-01 | 79.7% | 88.7% |
| 4933241 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.57 | 44.0 | 4.47e-01 | 86.4% | 100.0% |
| 3492373 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 45.0 | 3.64e-01 | 94.9% | 53.0% |
| 3941591 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.61e-01 | 86.4% | 92.9% |
| 3106034 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.52 | 45.0 | 2.99e-01 | 98.3% | 26.8% |
| 3659912 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 45.0 | 3.10e-01 | 100.0% | 42.9% |
| 3515518 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.50 | 41.0 | 3.31e-01 | 98.3% | 44.0% |
| 5001903 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 43.0 | 4.12e-01 | 96.6% | 90.0% |