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IMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012737
Arc-VirIMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012737
Identity
- Kingdom:
- archaea
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-58
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.80 | 55.0 | 5.87e-01 | 72.4% | 100.0% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.76 | 54.0 | 5.43e-01 | 74.1% | 78.0% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.73 | 50.0 | 4.34e-01 | 70.7% | 77.0% |
| 1gqiA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.73 | 56.0 | 3.68e-01 | 82.8% | 81.9% |
| 3rlfF01 | 1.20.58.370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like | 0.70 | 53.0 | 4.76e-01 | 84.5% | 69.8% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 46.0 | 5.16e-01 | 70.7% | 93.0% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.68 | 48.0 | 4.45e-01 | 75.9% | 88.3% |
| 4di1C02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.68 | 45.0 | 5.11e-01 | 70.7% | 97.6% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 51.0 | 4.62e-01 | 79.3% | 77.9% |
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.66 | 47.0 | 2.97e-01 | 77.6% | 14.6% |
| 4yt2A02 | 1.20.120.1300 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain | 0.65 | 53.0 | 4.31e-01 | 87.9% | 89.6% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 49.0 | 3.89e-01 | 89.7% | 85.4% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.63 | 48.0 | 4.77e-01 | 86.2% | 98.4% |
| 1vwxQ00 | 3.100.10.10 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › | 0.63 | 49.0 | 3.42e-01 | 84.5% | 61.5% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 48.0 | 4.17e-01 | 89.7% | 67.0% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.62 | 42.0 | 4.44e-01 | 72.4% | 96.0% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.62 | 45.0 | 3.72e-01 | 81.0% | 51.8% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.59 | 48.0 | 3.66e-01 | 91.4% | 36.8% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 46.0 | 3.57e-01 | 94.8% | 68.7% |
| 3j27A05 | 1.20.1280.260 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 43.0 | 3.73e-01 | 87.9% | 57.0% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.57 | 43.0 | 3.57e-01 | 87.9% | 89.7% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 40.0 | 4.11e-01 | 77.6% | 87.5% |
| 3l0mA02 | 1.20.1280.280 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 41.0 | 3.81e-01 | 82.8% | 80.8% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 44.0 | 3.08e-01 | 100.0% | 30.1% |
| 3w3sA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 42.0 | 2.64e-01 | 100.0% | 70.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3928718 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.81 | 55.0 | 4.09e-01 | 70.7% | 30.0% |
| 3488979 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.80 | 58.0 | 4.39e-01 | 75.9% | 64.8% |
| 3324188 | 2.1.1.23 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 | 0.78 | 56.0 | 3.99e-01 | 75.9% | 29.7% |
| 3416533 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.78 | 54.0 | 5.36e-01 | 72.4% | 70.0% |
| 5046057 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 54.0 | 5.20e-01 | 74.1% | 69.2% |
| 3395965 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.73 | 53.0 | 5.45e-01 | 75.9% | 94.5% |
| 3267759 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.64 | 53.0 | 4.02e-01 | 100.0% | 40.0% |
| 5001687 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.64 | 46.0 | 4.54e-01 | 79.3% | 73.0% |
| 5033518 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.62 | 46.0 | 2.91e-01 | 79.3% | 16.0% |
| 3507095 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.60 | 46.0 | 3.94e-01 | 86.2% | 83.0% |
| 3307050 | 3997.1.1.1 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.60 | 44.0 | 3.04e-01 | 82.8% | 37.0% |
| 5036975 | 231.1.3.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Neutral ceramidase large domain | 0.59 | 49.0 | 3.00e-01 | 98.3% | 42.1% |
| 3389928 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.58 | 39.0 | 2.89e-01 | 72.4% | 23.3% |
| 4862621 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.54 | 44.0 | 3.11e-01 | 98.3% | 29.6% |
| 5009434 | 11.1.1.157 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3501 | 0.53 | 45.0 | 3.42e-01 | 100.0% | 68.7% |
| 4895331 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.53 | 40.0 | 3.59e-01 | 86.2% | 85.6% |