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IMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012739

Arc-Vir

IMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012739

Identity

Kingdom:
archaea

Quality

71.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-49
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fgmA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.73 61.0 3.81e-01 100.0% 42.5%
2fqmA01 6.10.140.830 Special › Helix non-globular › Helix Hairpins › 0.72 51.0 5.13e-01 79.5% 93.5%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.68 52.0 3.79e-01 100.0% 28.8%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.65 55.0 4.84e-01 100.0% 77.5%
1aipA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 47.0 3.21e-01 100.0% 19.3%
3mweB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 44.0 3.06e-01 70.5% 33.3%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.63 45.0 2.81e-01 77.3% 21.2%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.61 47.0 3.36e-01 88.6% 69.9%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 4.06e-01 100.0% 45.5%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 50.0 3.05e-01 100.0% 30.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 49.0 3.42e-01 100.0% 25.7%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 43.0 3.15e-01 72.7% 95.0%
1uhvA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 48.0 2.87e-01 90.9% 64.2%
4uhwA03 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.59 38.0 3.49e-01 100.0% 43.3%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.59 42.0 3.64e-01 77.3% 57.7%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.58 44.0 3.05e-01 88.6% 64.2%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.58 42.0 3.58e-01 77.3% 71.8%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.57 40.0 3.12e-01 79.5% 70.3%
6todA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 47.0 2.90e-01 100.0% 42.3%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.63e-01 88.6% 89.7%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.03e-01 77.3% 89.9%
7d4rB01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 41.0 2.62e-01 79.5% 40.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 45.0 3.67e-01 100.0% 79.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 44.0 3.69e-01 100.0% 94.6%
5bjuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 42.0 2.64e-01 93.2% 30.8%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.54 39.0 3.36e-01 79.5% 95.9%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.54 44.0 3.07e-01 95.5% 64.1%
3zokA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.08e-01 100.0% 72.4%
3oduB01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 46.0 2.86e-01 100.0% 41.9%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 39.0 2.87e-01 97.7% 26.4%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 2.97e-01 95.5% 70.7%
2e3tB03 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.52 44.0 4.02e-01 100.0% 80.3%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.51 43.0 2.71e-01 100.0% 71.7%
1i72A00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 38.0 2.48e-01 100.0% 15.5%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 39.0 2.72e-01 88.6% 59.6%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.50 35.0 2.60e-01 75.0% 46.7%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 2.74e-01 100.0% 67.5%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 37.0 2.46e-01 93.2% 61.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289385 3433.1.2.1 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.84 60.0 5.73e-01 75.0% 66.0%
5051923 304.8.1.12 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.70 50.0 4.62e-01 97.7% 58.3%
5030555 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.69 49.0 5.03e-01 86.4% 82.5%
3739970 109.4.1.64 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.69 48.0 2.99e-01 77.3% 15.2%
2982157 223.1.1.1 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.68 53.0 3.52e-01 88.6% 56.6%
4927100 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.67 49.0 3.91e-01 79.5% 82.2%
3481511 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 58.0 4.86e-01 100.0% 60.0%
3675128 304.9.1.20 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 0.65 55.0 4.77e-01 100.0% 61.4%
3993299 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.63 53.0 4.22e-01 100.0% 48.4%
5010744 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 46.0 4.14e-01 84.1% 84.6%
4394562 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 47.0 2.76e-01 88.6% 23.5%
4107951 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.62 48.0 4.21e-01 100.0% 55.7%
3922539 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.62 50.0 3.10e-01 93.2% 65.9%
4279367 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 45.0 3.84e-01 84.1% 57.5%
3616718 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.61 48.0 2.81e-01 90.9% 29.4%
3348248 3012.1.1.14 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › KH_2 0.61 50.0 4.45e-01 100.0% 74.3%
3878697 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 49.0 2.96e-01 93.2% 68.7%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.59 41.0 3.19e-01 79.5% 33.0%
3249581 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.59 52.0 3.18e-01 100.0% 38.2%
3401010 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 43.0 3.17e-01 79.5% 57.4%
3779545 109.4.1.816 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RALGAPB_N 0.58 46.0 2.75e-01 93.2% 48.3%
5022966 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.58 41.0 2.77e-01 72.7% 63.9%
None — 0.57 43.0 2.67e-01 86.4% 63.2%
3630469 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 47.0 2.85e-01 100.0% 12.9%
3998700 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.57 47.0 3.89e-01 93.2% 76.2%
3493263 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 44.0 2.72e-01 93.2% 55.2%
3701882 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 42.0 3.46e-01 86.4% 64.2%
3177860 11.1.5.98 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SPT23_MGA2_DBD 0.56 47.0 3.05e-01 95.5% 36.7%
3789952 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 43.0 2.65e-01 93.2% 62.0%
3580124 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 43.0 4.15e-01 86.4% 88.0%
4768398 331.10.1.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.56 45.0 2.99e-01 100.0% 42.9%
4529325 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.55 45.0 2.96e-01 90.9% 67.6%
4593386 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 41.0 2.53e-01 88.6% 66.4%
3907411 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.55 40.0 2.47e-01 81.8% 70.0%
3368713 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.55 47.0 3.93e-01 95.5% 69.3%
None — 0.55 49.0 2.92e-01 100.0% 37.1%
3571482 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 48.0 2.89e-01 100.0% 35.9%
3576746 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 44.0 3.03e-01 100.0% 74.1%
3901998 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 43.0 2.66e-01 93.2% 61.3%
4019354 2006.1.6.5 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Tfb4 0.54 40.0 2.55e-01 84.1% 46.8%
None — 0.53 45.0 2.78e-01 100.0% 38.6%
None — 0.53 43.0 2.63e-01 100.0% 71.3%
None — 0.53 44.0 2.63e-01 100.0% 45.4%
3325708 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 44.0 2.69e-01 100.0% 20.8%
3739283 3322.1.1.1 ↗ alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N 0.51 41.0 2.98e-01 90.9% 60.0%
4999142 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 43.0 2.93e-01 100.0% 39.4%
3581269 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.51 40.0 2.86e-01 100.0% 72.4%