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IMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012799

Arc-Vir

IMGVR_UViG_3300025326_000018-3300025326-Ga0209342_1000012799

Identity

Kingdom:
archaea

Quality

68.8 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-70_127-217
PDB
Domain cluster: rep: AB366653.2__BAG41672.1__X__00222__D20-44_116-236
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gpcA00 3.90.198.10 Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein 0.80 75.0 5.97e-01 100.0% 86.2%
3er0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 41.0 5.05e-01 82.9% 100.0%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 42.0 4.54e-01 95.7% 86.3%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 26.0 3.14e-01 86.3% 59.2%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 34.0 4.19e-01 76.9% 100.0%
3lp8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 49.0 4.62e-01 94.0% 98.6%
3e9eB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 42.0 3.38e-01 82.9% 100.0%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 31.0 3.48e-01 81.2% 71.0%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 4.06e-01 82.9% 82.1%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 34.0 4.01e-01 78.6% 100.0%
3fjyA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 38.0 3.38e-01 76.9% 100.0%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.09e-01 79.5% 62.7%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 3.06e-01 100.0% 84.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995733 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 77.0 6.39e-01 100.0% 88.9%
378 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.79 73.0 5.88e-01 98.3% 88.1%
3942656 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.78 72.0 5.89e-01 99.1% 88.8%
4886249 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.68 26.0 3.51e-01 78.6% 63.1%
3315568 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.60 25.0 3.09e-01 82.9% 58.6%
4373903 206.1.3.18 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.58 44.0 3.30e-01 94.0% 31.2%
3414245 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 37.0 4.25e-01 88.9% 93.8%
3841256 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 29.0 3.06e-01 80.3% 53.6%
4034458 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.53 44.0 3.36e-01 92.3% 96.7%
3990321 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 3.43e-01 83.8% 69.0%
3327990 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.53 40.0 3.17e-01 79.5% 99.2%
4413512 206.1.3.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.52 45.0 3.67e-01 95.7% 56.9%
5083787 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 29.0 3.24e-01 82.9% 69.5%
3628127 2.1.1.3 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.51 35.0 3.54e-01 80.3% 70.0%
1211213 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.50 42.0 3.15e-01 92.3% 96.7%
D2 medium residues 71-126_218-239
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 34.0 3.30e-01 70.5% 97.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995733 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.91 82.0 5.95e-01 94.9% 83.7%
3085 103.1.1.84 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 0.51 28.0 2.73e-01 93.6% 46.2%
4560978 2002.1.1.108 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.51 41.0 2.74e-01 92.3% 96.2%