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IMGVR_UViG_3300025326_000612-3300025326-Ga0209342_100263602
Arc-VirIMGVR_UViG_3300025326_000612-3300025326-Ga0209342_100263602
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-87
Domain cluster:
rep: MT701595.1__QPB09713.1__CPT_Shaeky_026__00026__D24-87
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 44.5 | 1.20e-11 | 53.1% | 91.3% |
D2
high
residues 92-144
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 48.0 | 4.15e-01 | 73.6% | 46.5% |
| 1hdiA01 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.65 | 36.0 | 2.44e-01 | 100.0% | 14.6% |
| 3py8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 43.0 | 3.10e-01 | 73.6% | 70.8% |
| 5feyA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 43.0 | 3.92e-01 | 77.4% | 55.1% |
| 6tuaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.61 | 40.0 | 2.69e-01 | 94.3% | 18.8% |
| 2rd9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.61 | 41.0 | 2.88e-01 | 71.7% | 81.7% |
| 2khoA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 37.0 | 2.65e-01 | 100.0% | 21.4% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 49.0 | 3.62e-01 | 96.2% | 49.6% |
| 5dkaA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 37.0 | 3.19e-01 | 75.5% | 38.5% |
| 7xb6B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 46.0 | 3.15e-01 | 100.0% | 26.5% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 40.0 | 2.61e-01 | 86.8% | 19.0% |
| 5hnmC00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.55 | 36.0 | 2.55e-01 | 86.8% | 20.2% |
| 2lxhC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 36.0 | 3.56e-01 | 71.7% | 63.8% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 42.0 | 2.70e-01 | 90.6% | 35.3% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.51 | 46.0 | 2.95e-01 | 100.0% | 22.3% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.51 | 37.0 | 3.45e-01 | 88.7% | 75.3% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.67e-01 | 94.3% | 97.4% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3392056 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.71 | 50.0 | 4.32e-01 | 75.5% | 85.9% |
| 4024032 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 51.0 | 4.43e-01 | 79.2% | 50.6% |
| 3825947 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.70 | 49.0 | 4.79e-01 | 79.2% | 66.7% |
| 3573660 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.70 | 50.0 | 4.37e-01 | 79.2% | 89.4% |
| 3457383 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 50.0 | 4.29e-01 | 79.2% | 81.1% |
| 3816782 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 49.0 | 4.39e-01 | 75.5% | 98.7% |
| 3683169 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 50.0 | 4.12e-01 | 79.2% | 78.0% |
| 3494950 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 53.0 | 4.65e-01 | 84.9% | 56.2% |
| 3255227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 50.0 | 4.18e-01 | 79.2% | 78.9% |
| 3482300 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 49.0 | 4.29e-01 | 79.2% | 89.4% |
| 3250498 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.67 | 48.0 | 4.03e-01 | 79.2% | 43.0% |
| 3457996 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 47.0 | 3.78e-01 | 77.4% | 65.2% |
| 4196593 | 601.50.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain › FliD_C | 0.67 | 41.0 | 2.82e-01 | 75.5% | 18.9% |
| 3263160 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.66 | 48.0 | 3.92e-01 | 79.2% | 73.3% |
| 3342185 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.66 | 47.0 | 3.99e-01 | 77.4% | 75.8% |
| 3666975 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.65 | 46.0 | 4.06e-01 | 77.4% | 48.2% |
| 4011583 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.65 | 47.0 | 3.96e-01 | 79.2% | 80.0% |
| 3192866 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 48.0 | 4.38e-01 | 83.0% | 59.5% |
| 3797192 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 43.0 | 4.34e-01 | 71.7% | 69.1% |
| 3724405 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 47.0 | 4.19e-01 | 81.1% | 93.8% |
| 3431026 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.63 | 48.0 | 4.09e-01 | 86.8% | 87.4% |
| 3937240 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.63 | 45.0 | 4.24e-01 | 81.1% | 60.0% |
| 3598301 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 46.0 | 4.02e-01 | 88.7% | 48.9% |
| 3845756 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.61 | 44.0 | 4.23e-01 | 81.1% | 69.2% |
| 3692487 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.60 | 43.0 | 3.63e-01 | 79.2% | 74.0% |
| 3489435 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.60 | 42.0 | 3.97e-01 | 77.4% | 60.0% |
| 3899147 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.60 | 40.0 | 3.77e-01 | 73.6% | 54.3% |
| 3766800 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 41.0 | 4.06e-01 | 71.7% | 70.9% |
| 3723227 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.60 | 43.0 | 3.89e-01 | 81.1% | 90.0% |
| 3430765 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.60 | 48.0 | 4.06e-01 | 96.2% | 51.0% |
| 3791383 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 41.0 | 3.51e-01 | 73.6% | 43.2% |
| 3395502 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 39.0 | 4.03e-01 | 81.1% | 74.0% |
| 3330286 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 38.0 | 4.17e-01 | 75.5% | 90.0% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 42.0 | 3.62e-01 | 81.1% | 82.2% |
| 3785325 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.57 | 41.0 | 3.61e-01 | 81.1% | 86.7% |
| 4325946 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.57 | 40.0 | 3.76e-01 | 81.1% | 58.6% |
| 4928633 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.55 | 42.0 | 3.39e-01 | 96.2% | 41.0% |
| 3451928 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.55 | 44.0 | 2.39e-01 | 90.6% | 58.8% |
| 3253247 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 41.0 | 3.95e-01 | 88.7% | 70.8% |
| 3406681 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.55 | 37.0 | 3.33e-01 | 71.7% | 63.4% |
| 3433472 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 35.0 | 3.85e-01 | 71.7% | 100.0% |
| 3933676 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.54 | 39.0 | 3.86e-01 | 83.0% | 100.0% |
| 4625359 | 7101.1.1.1 ↗ | extended segments › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Slu7 | 0.54 | 48.0 | 3.60e-01 | 100.0% | 67.7% |
| 3576409 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 36.0 | 3.63e-01 | 71.7% | 67.3% |
| 3740650 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.54 | 43.0 | 3.66e-01 | 96.2% | 54.0% |
| 3176868 | 129.1.1.102 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PF30133 | 0.54 | 39.0 | 2.72e-01 | 75.5% | 68.1% |
| 3468754 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.54 | 34.0 | 3.26e-01 | 75.5% | 55.0% |
| 3543532 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.53 | 36.0 | 3.92e-01 | 73.6% | 97.5% |
| 4056127 | 601.50.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain › FliD_C | 0.52 | 39.0 | 2.76e-01 | 84.9% | 48.6% |