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IMGVR_UViG_3300025326_002603-3300025326-Ga0209342_1000048916

Arc-Vir

IMGVR_UViG_3300025326_002603-3300025326-Ga0209342_1000048916

Quality

69.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.72 45.0 4.62e-01 90.8% 67.2%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 50.0 3.26e-01 75.4% 49.1%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.70 55.0 4.35e-01 83.1% 65.6%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.68 48.0 3.86e-01 75.4% 45.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.68 46.0 3.70e-01 75.4% 38.3%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.68 60.0 4.54e-01 100.0% 56.7%
4g29A00 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.67 58.0 4.40e-01 100.0% 50.6%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 41.0 3.77e-01 72.3% 48.2%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.66 46.0 4.30e-01 73.8% 67.1%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 4.89e-01 95.4% 80.3%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 45.0 3.45e-01 75.4% 70.0%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 50.0 4.04e-01 100.0% 42.1%
1cq3A00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.62 53.0 3.68e-01 95.4% 50.9%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 3.14e-01 75.4% 49.3%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.62 53.0 3.50e-01 100.0% 24.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 55.0 4.21e-01 100.0% 81.9%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.61 51.0 3.54e-01 100.0% 27.4%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 39.0 2.77e-01 75.4% 22.3%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.60 54.0 3.86e-01 100.0% 50.5%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 47.0 3.92e-01 86.2% 48.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 53.0 4.26e-01 98.5% 89.0%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.60 52.0 3.56e-01 100.0% 35.5%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.59 51.0 5.00e-01 96.9% 91.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 37.0 3.84e-01 80.0% 68.9%
3qugA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 3.70e-01 83.1% 70.8%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.58 47.0 3.03e-01 89.2% 38.7%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.38e-01 76.9% 41.7%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.58 42.0 4.01e-01 96.9% 67.6%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 50.0 4.38e-01 100.0% 76.8%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 45.0 3.44e-01 92.3% 98.9%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 2.89e-01 73.8% 44.6%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.56 39.0 4.16e-01 86.2% 88.9%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.56 49.0 4.37e-01 100.0% 85.3%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.20e-01 100.0% 78.4%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 38.0 2.89e-01 95.4% 27.1%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.55 47.0 3.41e-01 100.0% 59.9%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.55 40.0 3.94e-01 96.9% 72.5%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 2.98e-01 80.0% 67.4%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 48.0 3.62e-01 100.0% 72.7%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.25e-01 83.1% 80.4%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.93e-01 98.5% 19.6%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 41.0 2.46e-01 96.9% 12.3%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.53 42.0 4.07e-01 89.2% 88.2%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 3.92e-01 96.9% 70.6%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.91e-01 100.0% 77.7%
5itqA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.52 40.0 3.33e-01 89.2% 87.9%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 44.0 2.90e-01 100.0% 30.9%
1l0qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.88e-01 92.3% 85.6%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.86e-01 96.9% 23.1%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 40.0 3.05e-01 90.8% 39.6%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.93e-01 86.2% 59.6%
1ulvA04 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 2.89e-01 98.5% 93.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588455 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.84 48.0 4.66e-01 72.3% 52.9%
3989333 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.83 47.0 4.93e-01 72.3% 61.7%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.77 44.0 2.89e-01 72.3% 14.5%
3782244 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.72 61.0 5.32e-01 95.4% 63.0%
3984091 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.71 44.0 3.77e-01 90.8% 39.0%
5055980 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.71 50.0 3.02e-01 73.8% 12.8%
3238369 12.1.1.88 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 0.70 44.0 4.77e-01 75.4% 77.4%
3602976 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 5.65e-01 87.7% 96.4%
5014023 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.69 47.0 3.39e-01 72.3% 40.8%
3995040 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.69 41.0 2.92e-01 75.4% 20.0%
5063295 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.68 58.0 5.05e-01 100.0% 62.0%
3251867 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.68 53.0 4.14e-01 83.1% 93.8%
3743890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 53.0 4.08e-01 86.2% 40.7%
3507415 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 46.0 3.26e-01 72.3% 48.4%
3974426 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.66 45.0 4.15e-01 72.3% 54.1%
3544366 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.66 48.0 3.27e-01 76.9% 24.5%
184887 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.66 44.0 4.88e-01 81.5% 91.8%
4292275 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.65 47.0 2.88e-01 75.4% 26.6%
3616762 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.65 41.0 2.92e-01 75.4% 21.5%
3604107 210.1.1.4 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › IMP_cyclohyd 0.65 46.0 3.18e-01 73.8% 98.5%
3908488 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.64 46.0 3.20e-01 76.9% 24.5%
3591016 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 55.0 5.32e-01 100.0% 84.0%
3980114 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.64 42.0 3.23e-01 70.8% 29.3%
4962251 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.64 52.0 4.08e-01 89.2% 55.6%
3615545 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.63 56.0 4.81e-01 100.0% 65.7%
3407058 220.1.1.28 beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.63 55.0 3.98e-01 96.9% 38.3%
4474036 2008.1.1.40 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-MspI 0.63 52.0 3.59e-01 93.8% 73.3%
3245139 220.1.1.28 beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.63 55.0 4.14e-01 96.9% 41.9%
3812208 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 2.95e-01 89.2% 93.7%
5074320 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.62 50.0 3.99e-01 89.2% 76.2%
3511755 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.61 43.0 3.12e-01 73.8% 51.1%
4947855 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 52.0 3.13e-01 95.4% 71.4%
4527067 206.1.3.40 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.60 48.0 3.24e-01 87.7% 84.3%
3251228 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 3.84e-01 92.3% 50.3%
4607576 4.1.1.370 beta barrels › SH3 › SH3 › SH3 › PF28261 0.60 46.0 4.49e-01 83.1% 82.9%
3173029 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 3.77e-01 98.5% 46.3%
3782222 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 53.0 3.99e-01 100.0% 53.5%
3598127 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.19e-01 100.0% 90.4%
4952059 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.58 51.0 4.76e-01 98.5% 80.0%
5055776 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.68e-01 89.2% 95.7%
3240866 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.57 41.0 3.58e-01 76.9% 50.0%
1868024 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.57 33.0 3.89e-01 89.2% 90.2%
4929282 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 48.0 4.63e-01 96.9% 94.7%
3629728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.86e-01 96.9% 50.4%
4946616 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 46.0 4.30e-01 100.0% 88.9%
4021102 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 2.90e-01 100.0% 90.6%
3282895 912.1.1.0 few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain 0.56 51.0 3.57e-01 100.0% 94.4%
3244934 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 46.0 2.97e-01 95.4% 19.5%
5072529 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 45.0 4.18e-01 98.5% 87.8%
3485287 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 41.0 2.92e-01 89.2% 25.9%
3214084 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 38.0 2.81e-01 76.9% 38.2%
5041833 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 45.0 4.45e-01 96.9% 95.6%
4946087 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.52 43.0 3.52e-01 93.8% 88.8%
4934543 283.3.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › MK0786-like › MK0786-like › DHNA 0.52 44.0 3.50e-01 93.8% 78.5%
5047706 210.1.2.4 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.51 44.0 2.96e-01 100.0% 24.8%
5073695 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 40.0 3.68e-01 98.5% 80.0%
3258581 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 39.0 2.57e-01 89.2% 25.4%
5039096 274.1.1.67 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7289 0.50 44.0 3.67e-01 98.5% 57.4%