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IMGVR_UViG_3300025333_000004-3300025333-Ga0208137_1003619

Arc-Vir

IMGVR_UViG_3300025333_000004-3300025333-Ga0208137_1003619

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-168
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 50.0 5.54e-01 88.5% 83.1%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 49.0 5.73e-01 84.4% 95.5%
3h0dA01 3.30.56.130 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain 0.75 53.0 6.00e-01 85.4% 98.6%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.18e-01 94.8% 68.9%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.69e-01 95.8% 85.2%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.80e-01 100.0% 94.9%
2v9vA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 5.52e-01 85.4% 95.7%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.65e-01 89.6% 93.3%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.33e-01 97.9% 80.9%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 4.84e-01 95.8% 74.2%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 5.30e-01 100.0% 76.2%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.27e-01 100.0% 88.2%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.68 51.0 5.07e-01 91.7% 76.2%
1ku2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 38.0 4.57e-01 83.3% 94.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.25e-01 100.0% 82.5%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.98e-01 94.8% 78.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.14e-01 100.0% 80.2%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.62e-01 100.0% 80.7%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 46.0 4.68e-01 84.4% 77.9%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 4.47e-01 83.3% 78.6%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 5.03e-01 99.0% 93.4%
6ocxA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 41.0 3.53e-01 89.6% 44.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.53e-01 100.0% 73.3%
1pm6A00 1.10.1660.20 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Excisionase (Xis) protein 0.57 34.0 3.76e-01 72.9% 76.4%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.57 46.0 4.74e-01 90.6% 96.6%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 35.0 3.40e-01 89.6% 53.1%
2zy2A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 46.0 4.03e-01 91.7% 60.1%
1if1B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.27e-01 86.5% 97.1%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 35.0 3.67e-01 77.1% 71.1%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 44.0 3.17e-01 90.6% 75.4%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.53 37.0 4.00e-01 82.3% 88.6%
6n9gA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.48e-01 96.9% 95.0%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.51 40.0 3.72e-01 89.6% 64.8%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.67e-01 82.3% 69.8%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 35.0 3.79e-01 78.1% 84.3%
4xrpC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 3.22e-01 85.4% 45.1%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 33.0 3.69e-01 77.1% 87.8%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4522308 101.1.2.654 alpha arrays › HTH › HTH › winged helix domain › RPA 0.78 58.0 6.26e-01 90.6% 92.5%
3594128 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 51.0 5.45e-01 89.6% 76.5%
2070315 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.77 53.0 5.96e-01 90.6% 94.4%
3611205 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 50.0 4.34e-01 87.5% 45.0%
3595354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 48.0 4.22e-01 83.3% 43.6%
4156356 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.76 54.0 5.62e-01 89.6% 78.9%
5009381 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 48.0 5.53e-01 87.5% 88.6%
3794506 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.76 52.0 4.03e-01 91.7% 33.2%
4991088 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 51.0 5.50e-01 86.5% 83.7%
3782579 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.75 51.0 4.56e-01 90.6% 50.4%
3167236 148.1.3.31 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.74 51.0 5.42e-01 85.4% 80.0%
4132486 101.1.2.187 alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.73 55.0 5.72e-01 91.7% 84.4%
4376064 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 50.0 5.65e-01 87.5% 98.6%
3166133 101.1.2.103 alpha arrays › HTH › HTH › winged helix domain › SelB-wing_2 0.72 48.0 5.53e-01 90.6% 94.3%
5024958 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.72 55.0 5.65e-01 100.0% 85.6%
3515401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.45e-01 90.6% 72.5%
4672445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 52.0 5.04e-01 91.7% 69.1%
4958040 101.1.2.896 alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.70 56.0 5.64e-01 100.0% 86.3%
4387216 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.70 52.0 5.42e-01 89.6% 84.4%
3542800 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.69 56.0 4.11e-01 87.5% 32.9%
4310506 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.69 57.0 4.29e-01 90.6% 37.8%
3887336 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.69 56.0 4.27e-01 90.6% 37.8%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 5.60e-01 90.6% 98.7%
4971744 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.69 50.0 5.24e-01 95.8% 85.9%
3711570 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 4.40e-01 89.6% 47.1%
3723366 101.1.2.533 alpha arrays › HTH › HTH › winged helix domain › WH_CYT4 0.68 52.0 5.15e-01 90.6% 78.0%
3743308 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 5.39e-01 92.7% 82.0%
3638163 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.68 56.0 5.48e-01 99.0% 81.3%
4983791 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 51.0 4.58e-01 94.8% 58.5%
3731219 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.68 59.0 5.48e-01 99.0% 83.2%
4932062 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.67 52.0 5.20e-01 100.0% 79.0%
3252019 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 4.88e-01 89.6% 82.5%
3412336 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 5.21e-01 85.4% 87.1%
3692895 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.67 52.0 3.86e-01 92.7% 33.9%
4585912 101.1.2.603 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.67 50.0 3.35e-01 94.8% 20.3%
5045983 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.67 53.0 5.28e-01 94.8% 81.0%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.67 50.0 4.01e-01 92.7% 40.5%
3467284 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.66 56.0 5.41e-01 99.0% 82.4%
4971686 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 55.0 5.33e-01 100.0% 81.0%
None 0.66 50.0 4.01e-01 92.7% 41.6%
4478972 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 54.0 5.21e-01 100.0% 77.3%
3802667 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.66 51.0 5.01e-01 92.7% 76.2%
3726854 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 49.0 4.91e-01 100.0% 76.0%
3841412 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.66 55.0 5.20e-01 99.0% 76.5%
3989819 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 47.0 5.19e-01 90.6% 96.0%
5082509 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.66 52.0 4.69e-01 99.0% 62.3%
5077022 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 54.0 5.32e-01 100.0% 85.0%
4990919 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.57e-01 99.0% 92.0%
3552400 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.65 54.0 3.88e-01 99.0% 30.3%
3738672 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 5.09e-01 95.8% 87.8%
4032552 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 57.0 5.49e-01 100.0% 90.9%
3700237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 5.04e-01 99.0% 72.3%
5045098 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.63 50.0 5.19e-01 93.8% 91.1%
3579786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 5.44e-01 100.0% 94.9%
3936427 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 39.0 4.58e-01 81.2% 92.3%
4991879 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 5.39e-01 99.0% 97.1%
5010617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.58e-01 93.8% 85.0%
2061059 101.1.2.131 alpha arrays › HTH › HTH › winged helix domain › RctB_central 0.62 51.0 4.23e-01 91.7% 68.3%
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.62 55.0 3.80e-01 99.0% 29.7%
3493459 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.62 43.0 4.48e-01 95.8% 80.0%
3240179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 5.09e-01 99.0% 83.8%
3167816 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 5.12e-01 99.0% 93.3%
5082704 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.62 48.0 3.82e-01 95.8% 41.0%
3240125 101.1.2.493 alpha arrays › HTH › HTH › winged helix domain › PF26557 0.62 47.0 5.12e-01 95.8% 98.8%
4014949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 5.28e-01 99.0% 96.8%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 55.0 5.06e-01 100.0% 76.0%
4478358 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.82e-01 88.5% 99.0%
5011183 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.61 54.0 5.22e-01 100.0% 87.3%
3921187 320.4.1.7 a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 0.61 50.0 3.91e-01 100.0% 40.5%
4943364 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 54.0 4.99e-01 100.0% 78.0%
3889562 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.75e-01 89.6% 98.2%
5036311 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 52.0 5.18e-01 100.0% 93.0%
4173782 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 53.0 5.04e-01 100.0% 83.5%
3740460 101.1.2.113 alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 0.58 51.0 4.27e-01 100.0% 78.3%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 46.0 4.50e-01 100.0% 77.3%
3908545 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.58 47.0 4.46e-01 99.0% 74.8%
3563063 320.4.1.0 a+b two layers › R3H domain-like › PUB domain › PUB domain 0.57 49.0 4.41e-01 100.0% 67.9%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.56 51.0 4.07e-01 100.0% 87.6%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 51.0 4.06e-01 100.0% 87.0%
3394822 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.55 50.0 3.94e-01 100.0% 82.6%
4227814 101.1.2.546 alpha arrays › HTH › HTH › winged helix domain › Methyltransf_2 0.55 49.0 3.24e-01 100.0% 35.7%
3896720 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.48e-01 89.6% 97.5%
3781705 101.1.2.527 alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.54 46.0 4.41e-01 97.9% 80.0%
3416278 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.54 46.0 4.69e-01 94.8% 96.8%
3937063 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.53 45.0 4.47e-01 93.8% 93.0%
3254281 3241.1.1.1 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.52 46.0 3.47e-01 100.0% 69.4%
5032322 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.50 40.0 4.01e-01 100.0% 85.0%
D2 medium residues 1-72
PDB
Domain cluster: representative