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IMGVR_UViG_3300025333_000006-3300025333-Ga0208137_100436
Arc-VirIMGVR_UViG_3300025333_000006-3300025333-Ga0208137_100436
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-115
Domain cluster:
rep: OP810509.1__WAK43900.1__IAPFLPAM_00040__00040__D27-100
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 47.0 | 4.88e-01 | 91.5% | 80.5% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.64 | 43.0 | 4.45e-01 | 87.2% | 73.0% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 49.0 | 4.61e-01 | 91.5% | 69.3% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 48.0 | 4.37e-01 | 88.3% | 63.9% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.61 | 44.0 | 4.75e-01 | 89.4% | 91.1% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 39.0 | 3.88e-01 | 84.0% | 62.9% |
| 4fvdA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 43.0 | 4.37e-01 | 87.2% | 76.6% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 34.0 | 3.98e-01 | 73.4% | 93.0% |
| 6cz4A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 39.0 | 4.13e-01 | 83.0% | 77.9% |
| 8fd9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 38.0 | 4.12e-01 | 83.0% | 83.1% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 49.0 | 3.44e-01 | 100.0% | 62.3% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 50.0 | 4.26e-01 | 100.0% | 73.8% |
| 2gy5A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 3.55e-01 | 84.0% | 63.6% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 48.0 | 4.50e-01 | 100.0% | 86.6% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 41.0 | 4.07e-01 | 91.5% | 77.0% |
| 2ewhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.52 | 33.0 | 3.47e-01 | 80.9% | 70.6% |
| 2jiiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 3.74e-01 | 83.0% | 68.2% |
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 43.0 | 4.07e-01 | 92.6% | 81.1% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 42.0 | 4.03e-01 | 91.5% | 77.9% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.50 | 42.0 | 4.01e-01 | 92.6% | 81.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289340 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 51.0 | 5.55e-01 | 85.1% | 85.0% |
| 4395103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 47.0 | 4.81e-01 | 88.3% | 68.9% |
| 4519111 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.71 | 49.0 | 5.02e-01 | 89.4% | 74.4% |
| 4083333 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.71 | 48.0 | 4.79e-01 | 88.3% | 68.4% |
| 4098005 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 49.0 | 5.01e-01 | 88.3% | 75.6% |
| 4553723 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.68 | 46.0 | 4.61e-01 | 88.3% | 68.4% |
| 3058418 | 1.1.13.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach | 0.67 | 53.0 | 5.16e-01 | 89.4% | 76.5% |
| 4212521 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 44.0 | 4.55e-01 | 89.4% | 72.2% |
| 4129680 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.65 | 49.0 | 4.64e-01 | 87.2% | 67.3% |
| 3965594 | 1.1.13.53 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 | 0.63 | 53.0 | 5.33e-01 | 95.7% | 89.5% |
| 4644809 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.62 | 48.0 | 4.52e-01 | 87.2% | 67.0% |
| 5082946 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.62 | 50.0 | 5.24e-01 | 86.2% | 100.0% |
| 4163756 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 44.0 | 4.41e-01 | 90.4% | 73.7% |
| 4066771 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 44.0 | 4.44e-01 | 91.5% | 74.7% |
| 4586058 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.61 | 44.0 | 4.25e-01 | 87.2% | 67.6% |
| 4457938 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.60 | 46.0 | 4.20e-01 | 87.2% | 60.8% |
| 3407835 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 53.0 | 3.92e-01 | 100.0% | 82.6% |
| 3249410 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 37.0 | 4.22e-01 | 84.0% | 85.5% |
| 4983682 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.59 | 49.0 | 4.23e-01 | 88.3% | 78.6% |
| 3496092 | 1.1.7.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 | 0.58 | 52.0 | 3.58e-01 | 100.0% | 69.2% |
| 3500345 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 52.0 | 3.59e-01 | 100.0% | 69.6% |
| 3785193 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.56 | 40.0 | 3.89e-01 | 88.3% | 66.7% |
| 4333314 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 37.0 | 4.37e-01 | 72.3% | 100.0% |
| 4245054 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 46.0 | 3.43e-01 | 92.6% | 36.7% |
| 3264859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.67e-01 | 84.0% | 66.7% |
| 3949305 | 1.1.13.54 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_L | 0.53 | 48.0 | 4.12e-01 | 100.0% | 88.3% |
| 3272261 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.52 | 37.0 | 3.73e-01 | 86.2% | 73.7% |
| 4509138 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.52 | 44.0 | 3.32e-01 | 90.4% | 39.5% |
| 3965192 | 1.1.13.67 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 | 0.51 | 40.0 | 3.81e-01 | 86.2% | 97.4% |
| 3236774 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 39.0 | 2.77e-01 | 84.0% | 49.2% |
| 2989727 | 1.1.13.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N | 0.50 | 45.0 | 4.37e-01 | 98.9% | 89.6% |
| 4008248 | 1.1.7.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 | 0.50 | 43.0 | 3.94e-01 | 97.9% | 78.5% |