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IMGVR_UViG_3300025344_000001-3300025344-Ga0208772_10004197

Arc-Vir

IMGVR_UViG_3300025344_000001-3300025344-Ga0208772_10004197

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.74 50.0 4.08e-01 71.0% 85.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 60.0 5.40e-01 90.3% 67.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.72 59.0 4.98e-01 90.3% 59.6%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.72 54.0 4.75e-01 98.4% 56.3%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.70 47.0 4.81e-01 88.7% 72.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 55.0 4.68e-01 90.3% 57.8%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.69 55.0 4.30e-01 91.9% 55.8%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 45.0 3.87e-01 71.0% 97.0%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 45.0 3.71e-01 71.0% 93.7%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 52.0 4.26e-01 88.7% 48.3%
1bcoA02 2.30.30.130 Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal 0.64 49.0 4.78e-01 82.3% 100.0%
2iafA00 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.64 48.0 3.73e-01 82.3% 84.3%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.64 55.0 4.10e-01 100.0% 74.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.79e-01 100.0% 77.6%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 5.04e-01 98.4% 87.5%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 55.0 4.54e-01 100.0% 58.7%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 3.91e-01 100.0% 67.9%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 49.0 4.05e-01 100.0% 74.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 3.93e-01 100.0% 86.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.63e-01 98.4% 90.3%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.71e-01 77.4% 97.9%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 45.0 4.52e-01 91.9% 87.1%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 50.0 4.25e-01 96.8% 70.2%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.04e-01 98.4% 59.8%
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 39.0 3.02e-01 71.0% 74.5%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 46.0 3.72e-01 90.3% 93.5%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.56 47.0 3.68e-01 100.0% 72.8%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 42.0 3.22e-01 82.3% 65.4%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 42.0 4.33e-01 93.5% 88.1%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.68e-01 96.8% 90.8%
4huzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 42.0 3.23e-01 88.7% 88.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 3.24e-01 87.1% 37.4%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 4.27e-01 100.0% 93.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 4.23e-01 100.0% 95.0%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 43.0 3.35e-01 88.7% 83.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 4.11e-01 100.0% 90.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 42.0 4.01e-01 93.5% 78.7%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.55e-01 96.8% 62.1%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 46.0 4.56e-01 100.0% 93.9%
5aj3K00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.51 42.0 3.30e-01 91.9% 74.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 4.20e-01 100.0% 90.9%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 3.27e-01 91.9% 53.4%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 42.0 4.18e-01 100.0% 92.5%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 41.0 4.15e-01 98.4% 96.8%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.72e-01 88.7% 98.7%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044594 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.80 69.0 6.04e-01 100.0% 64.4%
4338934 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.77 54.0 5.36e-01 87.1% 70.8%
3413365 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.71 58.0 4.35e-01 91.9% 50.6%
3563547 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.71 57.0 4.57e-01 90.3% 54.4%
4373611 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.70 59.0 4.21e-01 91.9% 40.6%
3196366 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.70 44.0 3.14e-01 90.3% 21.6%
3787188 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.68 46.0 2.92e-01 71.0% 95.7%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.68 50.0 4.14e-01 79.0% 47.3%
3232054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.29e-01 80.6% 51.0%
5045854 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.67 48.0 4.41e-01 88.7% 58.7%
4591449 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.66 47.0 2.87e-01 75.8% 58.0%
1149586 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.66 45.0 3.56e-01 71.0% 81.9%
3810543 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.66 53.0 4.49e-01 91.9% 59.1%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 52.0 4.90e-01 87.1% 77.3%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 51.0 4.57e-01 88.7% 74.4%
3686111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 44.0 4.08e-01 72.6% 72.5%
3450097 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.64 49.0 3.97e-01 83.9% 70.6%
4606701 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.63 43.0 2.75e-01 72.6% 61.0%
3946848 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.63 51.0 4.19e-01 88.7% 59.1%
4023222 7556.1.1.0 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase 0.63 45.0 2.77e-01 75.8% 65.6%
4963443 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.63 51.0 4.43e-01 88.7% 80.0%
4508538 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.62 48.0 2.90e-01 83.9% 70.4%
3515139 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 3.62e-01 91.9% 43.1%
4155224 9.16.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 0.61 45.0 3.44e-01 80.6% 66.9%
5067458 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.79e-01 83.9% 100.0%
5018923 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.60 41.0 3.91e-01 88.7% 60.0%
3290713 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.60 41.0 3.05e-01 71.0% 68.8%
4159686 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 52.0 3.95e-01 100.0% 68.4%
3696144 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 50.0 2.79e-01 100.0% 11.7%
5031165 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.60 48.0 4.71e-01 98.4% 82.9%
3791752 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.78e-01 96.8% 87.7%
3676628 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.59 48.0 4.02e-01 95.2% 73.3%
3205559 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.59 50.0 3.87e-01 96.8% 52.4%
3922234 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.20e-01 100.0% 79.1%
3665124 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.11e-01 88.7% 79.6%
4210253 10.1.1.26 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.59 51.0 3.81e-01 100.0% 70.9%
3257304 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.58 50.0 4.29e-01 100.0% 86.7%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.58 49.0 4.57e-01 98.4% 77.5%
3523446 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.58 49.0 4.27e-01 100.0% 90.0%
3226744 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.47e-01 100.0% 90.0%
3783958 9.16.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 0.58 46.0 3.47e-01 90.3% 95.2%
3768742 4.1.1.355 beta barrels › SH3 › SH3 › SH3 › WAC_Acf1_DNA_bd 0.57 49.0 3.27e-01 98.4% 39.6%
3062973 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.57 41.0 2.71e-01 80.6% 74.8%
2701957 6023.1.1.1 beta barrels › Restriction endonuclease PabI › Restriction endonuclease PabI › Restriction endonuclease PabI › RE_R_Pab1 0.57 40.0 2.71e-01 74.2% 65.4%
4134639 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 45.0 3.85e-01 87.1% 75.0%
3635423 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 49.0 3.55e-01 100.0% 55.7%
4938162 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 50.0 4.45e-01 100.0% 81.1%
3937926 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.10e-01 85.5% 76.2%
5058910 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.63e-01 75.8% 75.3%
3710561 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 48.0 4.73e-01 100.0% 92.3%
4995973 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 47.0 3.28e-01 91.9% 53.7%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.56 46.0 4.13e-01 98.4% 69.5%
3281300 4.1.1.426 beta barrels › SH3 › SH3 › SH3 › PF31188 0.56 39.0 3.91e-01 88.7% 72.3%
3269834 220.1.1.95 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.56 47.0 3.85e-01 100.0% 77.6%
3503503 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.56 43.0 3.37e-01 87.1% 92.4%
3611339 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 44.0 4.01e-01 90.3% 64.7%
3934458 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.39e-01 74.2% 78.9%
5013654 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.55 46.0 2.90e-01 93.5% 20.9%
3585016 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 43.0 4.37e-01 88.7% 90.0%
4971822 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 46.0 3.36e-01 95.2% 84.0%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.43e-01 100.0% 84.3%
3290386 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.54 45.0 3.36e-01 91.9% 67.1%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 45.0 4.52e-01 100.0% 92.3%
3799509 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.54 41.0 2.95e-01 87.1% 75.2%
3232165 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 44.0 4.05e-01 100.0% 98.9%
5079230 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.53 46.0 3.92e-01 98.4% 61.0%
3295513 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 44.0 2.95e-01 91.9% 93.9%
3472236 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.52 40.0 2.82e-01 87.1% 78.7%
3948565 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 43.0 3.65e-01 91.9% 96.2%
5060242 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.63e-01 91.9% 96.0%
3575253 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 41.0 4.03e-01 98.4% 84.3%
3841889 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.51 39.0 2.82e-01 87.1% 81.9%
5063667 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.56e-01 91.9% 82.9%