←Back to structures
IMGVR_UViG_3300025344_000004-3300025344-Ga0208772_1001133
Arc-VirIMGVR_UViG_3300025344_000004-3300025344-Ga0208772_1001133
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-54
Domain cluster:
rep: KC292026__AGM11419.1__HGTV1-121__00089__D64-114
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14520.13 best | HHH_5 | 46.2 | 7.40e-12 | 100.0% | 86.0% |
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i1qA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.93 | 86.0 | 7.94e-01 | 100.0% | 80.6% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.92 | 79.0 | 7.64e-01 | 100.0% | 83.9% |
| 2zj8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.91 | 83.0 | 7.98e-01 | 100.0% | 87.7% |
| 2w9mA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.90 | 82.0 | 7.33e-01 | 100.0% | 75.0% |
| 6tqoA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.89 | 81.0 | 7.58e-01 | 100.0% | 83.3% |
| 4bxoB02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.87 | 74.0 | 6.79e-01 | 100.0% | 72.3% |
| 3c1yA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.87 | 79.0 | 7.27e-01 | 100.0% | 84.1% |
| 1y88A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.86 | 74.0 | 7.03e-01 | 100.0% | 81.4% |
| 3osnA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.85 | 73.0 | 6.33e-01 | 100.0% | 62.3% |
| 8b0qA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.85 | 75.0 | 7.06e-01 | 100.0% | 81.7% |
| 2bgwA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.84 | 73.0 | 6.44e-01 | 100.0% | 66.2% |
| 3mabA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.84 | 74.0 | 6.22e-01 | 100.0% | 68.2% |
| 1dgsA06 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.83 | 74.0 | 6.22e-01 | 100.0% | 61.4% |
| 1u9lB00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.81 | 71.0 | 6.41e-01 | 100.0% | 71.4% |
| 5tt5A05 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.81 | 71.0 | 6.16e-01 | 100.0% | 66.2% |
| 2a1jB01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.80 | 69.0 | 6.26e-01 | 100.0% | 76.8% |
| 5zrxA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.79 | 69.0 | 6.61e-01 | 100.0% | 88.1% |
| 2dflA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.79 | 68.0 | 6.46e-01 | 100.0% | 83.3% |
| 3kkaD00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.78 | 69.0 | 6.27e-01 | 100.0% | 80.9% |
| 4q45A03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.78 | 64.0 | 6.27e-01 | 100.0% | 85.5% |
| 1x9xA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.78 | 67.0 | 6.30e-01 | 100.0% | 83.9% |
| 3k1rB00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.77 | 67.0 | 5.93e-01 | 100.0% | 67.6% |
| 6qwvH02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.76 | 66.0 | 6.38e-01 | 100.0% | 93.1% |
| 2q0zX02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.76 | 66.0 | 6.29e-01 | 100.0% | 84.5% |
| 4is7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.76 | 66.0 | 5.89e-01 | 100.0% | 72.2% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.75 | 64.0 | 5.83e-01 | 100.0% | 78.6% |
| 1nt2B03 | 1.10.246.90 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain | 0.74 | 61.0 | 4.99e-01 | 96.0% | 72.4% |
| 2ozbE02 | 1.10.246.90 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain | 0.74 | 61.0 | 4.85e-01 | 96.0% | 71.0% |
| 4unfA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.74 | 64.0 | 4.86e-01 | 98.0% | 53.0% |
| 2kivA02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.72 | 61.0 | 5.86e-01 | 100.0% | 88.3% |
| 3tacB01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.71 | 60.0 | 4.56e-01 | 100.0% | 41.7% |
| 2e8oA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.71 | 59.0 | 5.66e-01 | 100.0% | 85.5% |
| 1kftA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.71 | 56.0 | 5.53e-01 | 94.0% | 87.5% |
| 1mpgA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.71 | 59.0 | 4.62e-01 | 100.0% | 59.3% |
| 2rrdA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.63 | 53.0 | 4.30e-01 | 100.0% | 54.5% |
| 4ai4A00 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.61 | 48.0 | 3.46e-01 | 100.0% | 33.3% |
| 2kicA00 | 1.10.150.590 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Dinitrogenase iron-molybdenum cofactor, N-terminal | 0.60 | 48.0 | 4.13e-01 | 100.0% | 72.9% |
| 2pmiB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 46.0 | 3.16e-01 | 100.0% | 51.6% |
| 2pbxA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 41.0 | 2.81e-01 | 88.0% | 22.8% |
ECOD (99)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4470895 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.99 | 95.0 | 9.10e-01 | 100.0% | 90.9% |
| 5051996 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.99 | 94.0 | 7.74e-01 | 100.0% | 62.5% |
| 4927990 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.98 | 93.0 | 5.64e-01 | 100.0% | 19.8% |
| 5073600 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.96 | 89.0 | 8.28e-01 | 100.0% | 81.7% |
| 4932604 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.96 | 90.0 | 7.51e-01 | 100.0% | 62.5% |
| 4945133 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.95 | 89.0 | 8.14e-01 | 100.0% | 79.4% |
| 5026932 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.95 | 87.0 | 8.43e-01 | 100.0% | 89.1% |
| 5061085 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.95 | 88.0 | 8.23e-01 | 100.0% | 83.3% |
| 4946797 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.95 | 87.0 | 7.91e-01 | 100.0% | 76.9% |
| 3998341 | 102.5.1.9 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 | 0.94 | 87.0 | 7.67e-01 | 100.0% | 72.9% |
| 4944206 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.94 | 87.0 | 8.11e-01 | 100.0% | 83.3% |
| 5039717 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.94 | 87.0 | 7.64e-01 | 100.0% | 71.4% |
| 4234483 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.94 | 86.0 | 8.08e-01 | 100.0% | 83.3% |
| 4948001 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.94 | 86.0 | 7.81e-01 | 100.0% | 76.9% |
| 3253841 | 102.5.1.9 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 | 0.94 | 87.0 | 7.12e-01 | 100.0% | 63.5% |
| 5076446 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.93 | 87.0 | 7.43e-01 | 100.0% | 66.7% |
| 4995116 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.93 | 86.0 | 8.34e-01 | 100.0% | 90.9% |
| 5034266 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.93 | 86.0 | 8.04e-01 | 100.0% | 83.3% |
| 5041504 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.93 | 85.0 | 7.51e-01 | 100.0% | 71.4% |
| 4944083 | 102.1.1.182 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Rad51 | 0.93 | 86.0 | 7.56e-01 | 100.0% | 71.4% |
| 5081795 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.93 | 86.0 | 7.55e-01 | 100.0% | 71.4% |
| 4152195 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.92 | 84.0 | 7.25e-01 | 100.0% | 66.7% |
| 5039719 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.92 | 85.0 | 7.93e-01 | 100.0% | 83.3% |
| 5031290 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.92 | 84.0 | 7.42e-01 | 100.0% | 71.4% |
| 5059290 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.92 | 85.0 | 8.22e-01 | 100.0% | 90.9% |
| 4969952 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.92 | 84.0 | 8.14e-01 | 100.0% | 90.9% |
| 4927478 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.92 | 84.0 | 7.43e-01 | 100.0% | 71.4% |
| 4940020 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.91 | 84.0 | 6.77e-01 | 100.0% | 56.2% |
| 5068422 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.91 | 83.0 | 6.85e-01 | 100.0% | 58.8% |
| 5039718 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.91 | 82.0 | 8.00e-01 | 100.0% | 90.9% |
| 5038815 | 102.1.1.119 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 | 0.91 | 83.0 | 5.99e-01 | 100.0% | 46.2% |
| 4199114 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.91 | 83.0 | 7.78e-01 | 100.0% | 83.3% |
| 4964212 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.91 | 82.0 | 7.30e-01 | 100.0% | 71.4% |
| 5076923 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.90 | 82.0 | 7.25e-01 | 100.0% | 71.4% |
| 4041283 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.90 | 82.0 | 7.71e-01 | 100.0% | 83.3% |
| 4981273 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.90 | 83.0 | 7.78e-01 | 100.0% | 84.7% |
| 4963018 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.90 | 80.0 | 7.82e-01 | 100.0% | 92.7% |
| 5052765 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.90 | 81.0 | 7.21e-01 | 100.0% | 71.4% |
| 4975251 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.89 | 81.0 | 7.60e-01 | 100.0% | 83.3% |
| 4949723 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.89 | 81.0 | 7.18e-01 | 100.0% | 71.4% |
| 4977889 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.89 | 81.0 | 7.17e-01 | 100.0% | 71.4% |
| 3973085 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.89 | 80.0 | 7.55e-01 | 100.0% | 83.3% |
| 4149240 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.89 | 81.0 | 7.15e-01 | 100.0% | 71.4% |
| None | — | 0.89 | 80.0 | 7.52e-01 | 100.0% | 83.3% | |
| 3290867 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.89 | 80.0 | 7.55e-01 | 100.0% | 86.7% |
| 3184108 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.89 | 80.0 | 7.54e-01 | 100.0% | 83.3% |
| 4321047 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.88 | 80.0 | 5.38e-01 | 100.0% | 29.9% |
| 4968089 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.88 | 79.0 | 7.47e-01 | 100.0% | 83.3% |
| 1305678 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.88 | 75.0 | 7.10e-01 | 92.0% | 79.3% |
| 4979223 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.88 | 80.0 | 7.50e-01 | 100.0% | 83.3% |
| 4881333 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.88 | 80.0 | 6.52e-01 | 100.0% | 59.1% |
| 5045952 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.88 | 79.0 | 6.91e-01 | 100.0% | 67.6% |
| 5065201 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.88 | 79.0 | 7.21e-01 | 100.0% | 76.9% |
| 4981272 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.87 | 75.0 | 7.28e-01 | 94.0% | 89.1% |
| 5003647 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.87 | 78.0 | 7.44e-01 | 100.0% | 86.2% |
| 4982189 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.87 | 79.0 | 7.00e-01 | 100.0% | 71.4% |
| 5056035 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.87 | 76.0 | 7.15e-01 | 100.0% | 81.7% |
| 5061691 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.87 | 78.0 | 7.32e-01 | 100.0% | 83.3% |
| 5060034 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.87 | 77.0 | 6.77e-01 | 100.0% | 68.5% |
| 4204484 | 102.1.1.81 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 | 0.87 | 78.0 | 5.25e-01 | 100.0% | 29.7% |
| 3410797 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.86 | 77.0 | 7.26e-01 | 100.0% | 86.7% |
| 3189901 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.86 | 77.0 | 6.86e-01 | 100.0% | 75.7% |
| 5018066 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.86 | 76.0 | 7.01e-01 | 100.0% | 76.9% |
| 5060570 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.86 | 77.0 | 6.40e-01 | 100.0% | 58.8% |
| 5038523 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.86 | 75.0 | 6.87e-01 | 98.0% | 75.4% |
| 4949718 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.86 | 76.0 | 7.19e-01 | 100.0% | 83.3% |
| 3276791 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.86 | 78.0 | 7.29e-01 | 100.0% | 86.7% |
| 5061478 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.86 | 76.0 | 6.79e-01 | 100.0% | 71.4% |
| 4999217 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.86 | 77.0 | 6.69e-01 | 100.0% | 66.7% |
| 4952069 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.85 | 76.0 | 7.16e-01 | 100.0% | 83.3% |
| 4975986 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.85 | 76.0 | 6.81e-01 | 100.0% | 71.4% |
| 157085 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.85 | 76.0 | 7.01e-01 | 100.0% | 78.1% |
| 4545185 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.85 | 77.0 | 6.85e-01 | 100.0% | 76.8% |
| 4965217 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.85 | 75.0 | 6.73e-01 | 100.0% | 71.4% |
| 4148062 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.85 | 77.0 | 6.99e-01 | 100.0% | 80.0% |
| 3554607 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.85 | 74.0 | 6.38e-01 | 100.0% | 65.0% |
| 4672295 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.85 | 75.0 | 6.25e-01 | 100.0% | 58.8% |
| 4209900 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.84 | 76.0 | 6.92e-01 | 100.0% | 81.5% |
| 4312504 | 102.1.1.3 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH | 0.84 | 76.0 | 6.82e-01 | 100.0% | 77.9% |
| 4975697 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.84 | 75.0 | 6.71e-01 | 100.0% | 75.7% |
| 3588005 | 102.1.1.51 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 | 0.84 | 70.0 | 6.30e-01 | 100.0% | 67.1% |
| 3889826 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.84 | 73.0 | 7.13e-01 | 100.0% | 90.9% |
| 4946451 | 102.1.1.182 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Rad51 | 0.83 | 73.0 | 6.54e-01 | 100.0% | 82.9% |
| 3608219 | 102.5.1.1 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 | 0.83 | 72.0 | 7.05e-01 | 100.0% | 90.9% |
| 4148402 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.83 | 74.0 | 6.29e-01 | 100.0% | 66.3% |
| 4336808 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.83 | 72.0 | 4.92e-01 | 100.0% | 33.7% |
| 3929386 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.83 | 72.0 | 6.47e-01 | 100.0% | 74.3% |
| 5073407 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.82 | 72.0 | 6.52e-01 | 100.0% | 75.4% |
| 5053331 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.82 | 73.0 | 6.09e-01 | 100.0% | 58.8% |
| 5059289 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.82 | 72.0 | 6.31e-01 | 100.0% | 70.7% |
| 4977890 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.82 | 70.0 | 6.50e-01 | 100.0% | 76.9% |
| 4058889 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.80 | 71.0 | 6.73e-01 | 100.0% | 88.3% |
| 3995293 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.80 | 71.0 | 6.36e-01 | 100.0% | 82.9% |
| 5059766 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.80 | 69.0 | 6.23e-01 | 98.0% | 70.0% |
| 5022597 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.80 | 70.0 | 6.48e-01 | 100.0% | 76.9% |
| 4286324 | 102.1.1.24 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 | 0.78 | 68.0 | 6.22e-01 | 100.0% | 77.9% |
| 3962255 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.78 | 68.0 | 6.47e-01 | 100.0% | 88.3% |
| 3958331 | 102.1.1.178 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DisA-linker | 0.78 | 68.0 | 4.91e-01 | 100.0% | 37.9% |
| 3283661 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.71 | 60.0 | 5.55e-01 | 100.0% | 75.4% |
D2
high
residues 68-155
Domain cluster:
rep: IMGVR_UViG_3300029825_000576-3300029825-Ga0134835_10112769__D8-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20901.4 best | Sf6_terminase | 32.2 | 1.30e-07 | 100.0% | 65.1% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 40.0 | 4.86e-01 | 76.1% | 89.3% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 41.0 | 4.29e-01 | 70.5% | 65.0% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 49.0 | 4.84e-01 | 87.5% | 71.4% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 61.0 | 5.78e-01 | 100.0% | 95.1% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 38.0 | 4.12e-01 | 70.5% | 67.1% |
| 7dswA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.63 | 52.0 | 3.38e-01 | 89.8% | 83.2% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 4.20e-01 | 87.5% | 58.4% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.62 | 55.0 | 5.00e-01 | 97.7% | 94.1% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 4.58e-01 | 75.0% | 90.4% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 4.05e-01 | 71.6% | 73.6% |
| 4fe7A03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 50.0 | 4.68e-01 | 100.0% | 81.7% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 44.0 | 3.52e-01 | 87.5% | 47.6% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 44.0 | 3.82e-01 | 86.4% | 68.6% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.54 | 41.0 | 2.97e-01 | 84.1% | 89.9% |
| 3w6vA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 45.0 | 4.24e-01 | 100.0% | 81.1% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.52 | 42.0 | 3.45e-01 | 87.5% | 52.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289034 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.70 | 41.0 | 4.80e-01 | 70.5% | 82.5% |
| 3962552 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.67 | 40.0 | 4.30e-01 | 70.5% | 69.3% |
| 4973199 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.67 | 43.0 | 5.12e-01 | 79.5% | 95.0% |
| 4034594 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 41.0 | 5.00e-01 | 70.5% | 100.0% |
| 3541263 | 604.1.1.227 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27002 | 0.65 | 52.0 | 4.41e-01 | 86.4% | 78.6% |
| 5009597 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.64 | 53.0 | 4.91e-01 | 88.6% | 86.4% |
| 5054107 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.64 | 53.0 | 3.79e-01 | 87.5% | 44.1% |
| 3619451 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 42.0 | 4.73e-01 | 77.3% | 92.3% |
| 3945219 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 49.0 | 4.52e-01 | 81.8% | 83.6% |
| 4946107 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.62 | 50.0 | 3.78e-01 | 87.5% | 74.0% |
| 3975800 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.61 | 45.0 | 3.13e-01 | 79.5% | 80.9% |
| 4458965 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.61 | 48.0 | 4.95e-01 | 85.2% | 96.2% |
| 4978032 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.59 | 47.0 | 3.73e-01 | 95.5% | 41.1% |
| 2761 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.58 | 40.0 | 4.05e-01 | 71.6% | 73.6% |
| 3976262 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.54 | 47.0 | 4.37e-01 | 100.0% | 78.3% |
| 4594465 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.54 | 47.0 | 4.60e-01 | 94.3% | 94.7% |
| 3680166 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.53 | 47.0 | 3.20e-01 | 100.0% | 39.1% |
| 4211867 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.53 | 46.0 | 4.34e-01 | 97.7% | 80.0% |
| 4590066 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.52 | 45.0 | 4.19e-01 | 100.0% | 76.1% |
| 4281674 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.51 | 36.0 | 3.48e-01 | 77.3% | 68.6% |