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IMGVR_UViG_3300025351_000111-3300025351-Ga0208135_1028856

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300025351_000111-3300025351-Ga0208135_1028856 ↗
Kingdom:: archaea

Quality

77.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-110

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3d3bJ00	3.30.70.600	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10	0.64	31.0	3.21e-01	91.5%	47.1%
4mt1A06	3.30.70.1430	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain	0.59	32.0	3.20e-01	91.5%	49.5%
3kp0A03	3.30.30.60	Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain	0.57	30.0	3.46e-01	85.1%	70.1%
6wubf01	3.30.70.60	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B	0.51	31.0	3.17e-01	91.5%	60.6%
2ab5B01	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.51	42.0	3.88e-01	94.7%	81.2%
1jmtA00	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.50	31.0	3.12e-01	92.6%	59.2%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4023990	304.44.1.1 ↗	a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10	0.65	30.0	3.03e-01	91.5%	41.8%
3995914	101.1.21.0 ↗	alpha arrays › HTH › HTH › HTH in T7 RNA polymerase	0.53	46.0	3.43e-01	96.8%	63.7%
3574338	101.1.21.0 ↗	alpha arrays › HTH › HTH › HTH in T7 RNA polymerase	0.53	45.0	3.39e-01	96.8%	65.5%
3472537	219.1.1.3 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH	0.53	42.0	2.82e-01	86.2%	94.0%
3889987	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	39.0	3.28e-01	77.7%	92.1%
3564603	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.53	29.0	2.92e-01	93.6%	48.4%
3199364	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.52	38.0	2.70e-01	76.6%	72.6%
3312666	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	29.0	3.27e-01	100.0%	72.9%
3313182	327.11.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II)	0.51	28.0	3.13e-01	73.4%	70.0%
3506556	3939.1.1.0 ↗	alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain	0.51	26.0	3.48e-01	70.2%	96.0%

D2 medium residues 111-162

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1pzwA00	3.40.1800.20	Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold ›	0.80	71.0	6.12e-01	100.0%	86.3%
5xs2B02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.77	46.0	3.36e-01	82.7%	24.2%
2cjsC01	3.30.60.120	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.72	45.0	5.14e-01	75.0%	86.8%
3knvA00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.71	43.0	3.25e-01	82.7%	25.2%
3gzsA00	1.25.40.390	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.67	50.0	2.87e-01	82.7%	8.5%
8balC01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.61	43.0	2.62e-01	73.1%	82.4%
4n4nB00	3.90.640.100	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.60	39.0	3.84e-01	78.8%	62.5%
5niiB01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.58	45.0	3.14e-01	86.5%	75.9%
3kenA00	3.40.850.10	Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain	0.58	44.0	2.73e-01	84.6%	25.2%
3vhtB02	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.58	36.0	4.06e-01	80.8%	97.1%
3m2pB00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.54	40.0	2.55e-01	78.8%	71.0%
4fk1A01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.53	45.0	3.04e-01	92.3%	76.5%
1rmdA02	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.51	32.0	3.68e-01	75.0%	100.0%
1ijyA00	1.10.2000.10	Mainly Alpha › Orthogonal Bundle › Frizzled cysteine-rich domain › Frizzled cysteine-rich domain	0.50	35.0	2.80e-01	76.9%	70.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3614646	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.77	55.0	3.83e-01	86.5%	25.2%
3696633	3393.1.1.2 ↗	extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc	0.76	54.0	4.36e-01	88.5%	41.1%
3228726	5054.1.1.59 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2	0.71	44.0	2.72e-01	76.9%	11.6%
3800501	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.71	57.0	4.05e-01	86.5%	43.4%
3575976	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.70	56.0	4.02e-01	86.5%	43.4%
3896368	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.70	56.0	4.00e-01	86.5%	41.9%
5073682	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.69	54.0	3.97e-01	86.5%	42.8%
3695271	109.26.1.8 ↗	alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › HEAT_Nup120	0.67	52.0	3.09e-01	82.7%	31.4%
1934775	109.4.1.1309 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SusD-like, SusD-like_2	0.65	51.0	2.94e-01	84.6%	9.2%
3497135	2004.1.1.30 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C	0.64	46.0	3.03e-01	76.9%	95.3%
5074538	375.1.3.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184	0.60	41.0	3.94e-01	71.2%	100.0%
4002481	109.6.1.2 ↗	alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N	0.57	49.0	2.87e-01	100.0%	12.0%
3166153	307.1.1.3 ↗	a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY	0.56	45.0	3.36e-01	88.5%	36.2%
3837772	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	49.0	3.16e-01	100.0%	78.0%
3264530	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	44.0	3.02e-01	100.0%	26.3%