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IMGVR_UViG_3300025352_000083-3300025352-Ga0207995_10159710
Arc-VirIMGVR_UViG_3300025352_000083-3300025352-Ga0207995_10159710
Identity
- Kingdom:
- archaea
Quality
79.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-36
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.85 | 68.0 | 4.46e-01 | 94.3% | 21.3% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 61.0 | 4.44e-01 | 88.6% | 30.4% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.79 | 67.0 | 4.45e-01 | 100.0% | 24.6% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.79 | 62.0 | 4.09e-01 | 94.3% | 21.3% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 65.0 | 5.77e-01 | 100.0% | 67.9% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 59.0 | 4.30e-01 | 85.7% | 30.6% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.77 | 56.0 | 3.71e-01 | 85.7% | 19.1% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.75 | 65.0 | 3.81e-01 | 100.0% | 13.3% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.75 | 52.0 | 3.44e-01 | 100.0% | 17.9% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.75 | 60.0 | 4.73e-01 | 100.0% | 42.5% |
| 1nh2B00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 59.0 | 5.64e-01 | 100.0% | 84.8% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 55.0 | 4.66e-01 | 82.9% | 50.8% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 58.0 | 4.57e-01 | 100.0% | 44.8% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.72 | 60.0 | 5.18e-01 | 100.0% | 61.7% |
| 1l8qA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 56.0 | 5.15e-01 | 97.1% | 65.3% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.72 | 54.0 | 4.53e-01 | 88.6% | 48.3% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 59.0 | 4.06e-01 | 97.1% | 26.4% |
| 2pmyA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.70 | 58.0 | 4.67e-01 | 100.0% | 47.9% |
| 3khyA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.69 | 59.0 | 3.69e-01 | 100.0% | 25.4% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 50.0 | 4.73e-01 | 97.1% | 63.8% |
| 1gjsA00 | 1.10.8.40 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain | 0.68 | 55.0 | 4.61e-01 | 94.3% | 58.5% |
| 3edpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 56.0 | 4.40e-01 | 100.0% | 42.1% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.68 | 55.0 | 5.04e-01 | 97.1% | 68.8% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.66 | 52.0 | 4.77e-01 | 88.6% | 68.1% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 53.0 | 4.32e-01 | 97.1% | 45.8% |
| 2px7A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.66 | 51.0 | 3.20e-01 | 91.4% | 49.8% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.66 | 51.0 | 3.28e-01 | 88.6% | 43.3% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 57.0 | 4.00e-01 | 100.0% | 37.9% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 49.0 | 4.38e-01 | 97.1% | 56.9% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.64 | 50.0 | 3.69e-01 | 100.0% | 30.8% |
| 4p9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 4.05e-01 | 100.0% | 47.8% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 52.0 | 3.56e-01 | 100.0% | 25.4% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 52.0 | 3.65e-01 | 97.1% | 37.4% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.62 | 53.0 | 5.31e-01 | 100.0% | 97.2% |
| 1sxjE02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 48.0 | 4.18e-01 | 100.0% | 53.1% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.61 | 46.0 | 3.80e-01 | 88.6% | 45.1% |
| 3zxsC02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 46.0 | 3.11e-01 | 88.6% | 19.5% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.60 | 47.0 | 3.77e-01 | 100.0% | 38.9% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 44.0 | 3.14e-01 | 100.0% | 27.6% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 40.0 | 3.79e-01 | 82.9% | 61.7% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.55 | 41.0 | 3.92e-01 | 97.1% | 70.8% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 47.0 | 4.06e-01 | 100.0% | 62.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3565003 | 165.1.1.3 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 | 0.95 | 81.0 | 8.19e-01 | 94.3% | 94.3% |
| 4976690 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.93 | 80.0 | 7.12e-01 | 97.1% | 68.0% |
| 3994704 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.91 | 79.0 | 6.46e-01 | 100.0% | 53.8% |
| 5052475 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.91 | 80.0 | 5.30e-01 | 100.0% | 28.5% |
| 3226963 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.90 | 81.0 | 6.50e-01 | 100.0% | 55.4% |
| 4020233 | 101.42.1.0 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins | 0.90 | 77.0 | 6.70e-01 | 100.0% | 63.6% |
| 4932940 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.89 | 75.0 | 5.23e-01 | 100.0% | 30.9% |
| 3229498 | 101.1.1.102 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 | 0.89 | 73.0 | 4.86e-01 | 91.4% | 25.6% |
| 3742476 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 74.0 | 5.90e-01 | 100.0% | 47.9% |
| 3326759 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.81 | 66.0 | 5.31e-01 | 100.0% | 46.7% |
| 4979030 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.81 | 65.0 | 4.41e-01 | 100.0% | 24.1% |
| 3798278 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.81 | 67.0 | 3.94e-01 | 100.0% | 12.8% |
| 3400018 | 109.27.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BTB | 0.80 | 68.0 | 4.06e-01 | 100.0% | 14.2% |
| 3189353 | 548.1.1.1 ↗ | alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP | 0.80 | 66.0 | 5.95e-01 | 100.0% | 68.0% |
| 3926339 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 62.0 | 3.90e-01 | 100.0% | 17.6% |
| 3247190 | 397.7.1.4 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › C_tripleX | 0.75 | 61.0 | 6.15e-01 | 97.1% | 97.1% |
| 4192201 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.75 | 61.0 | 3.97e-01 | 97.1% | 19.4% |
| 3587056 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 59.0 | 3.82e-01 | 88.6% | 20.0% |
| 4068026 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.74 | 56.0 | 3.66e-01 | 97.1% | 18.4% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.74 | 59.0 | 4.37e-01 | 100.0% | 33.3% |
| 4033902 | 4146.1.1.1 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like | 0.73 | 58.0 | 4.84e-01 | 88.6% | 55.0% |
| 5061659 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 57.0 | 4.73e-01 | 100.0% | 50.7% |
| 3312882 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.72 | 51.0 | 5.28e-01 | 82.9% | 100.0% |
| 3530449 | 604.12.1.131 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27853 | 0.71 | 59.0 | 4.31e-01 | 100.0% | 34.3% |
| 5035234 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 60.0 | 4.77e-01 | 100.0% | 46.7% |
| 3735933 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 57.0 | 3.94e-01 | 100.0% | 34.5% |
| 3755193 | 4146.1.1.7 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › DMAP_binding | 0.71 | 60.0 | 4.62e-01 | 97.1% | 51.2% |
| 3282441 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.70 | 55.0 | 3.56e-01 | 88.6% | 20.6% |
| 4203622 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.70 | 59.0 | 3.82e-01 | 100.0% | 20.6% |
| 3850399 | 3788.1.1.13 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › DMAP_binding | 0.70 | 61.0 | 4.52e-01 | 100.0% | 46.7% |
| 4506328 | 1054.1.1.1 ↗ | alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C | 0.70 | 59.0 | 5.32e-01 | 100.0% | 72.0% |
| 3412555 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 57.0 | 4.16e-01 | 100.0% | 32.7% |
| 4124570 | 1054.1.1.1 ↗ | alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C | 0.69 | 57.0 | 5.36e-01 | 100.0% | 80.0% |
| 4951511 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.68 | 49.0 | 4.45e-01 | 85.7% | 56.0% |
| 3511354 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.68 | 54.0 | 5.22e-01 | 88.6% | 80.0% |
| 3491875 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.67 | 58.0 | 4.88e-01 | 100.0% | 75.0% |
| 3281008 | 4299.1.1.0 ↗ | alpha arrays › BSD domain › BSD domain › BSD domain | 0.65 | 54.0 | 5.42e-01 | 100.0% | 91.4% |
| 3723174 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.64 | 55.0 | 4.23e-01 | 100.0% | 44.0% |
| 3477387 | 103.1.1.122 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DMAP_binding | 0.64 | 53.0 | 5.18e-01 | 100.0% | 87.5% |
| 3527376 | 6051.7.1.0 ↗ | alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 4 C-terminal docking domain › Class 4 C-terminal docking domain | 0.64 | 49.0 | 4.95e-01 | 97.1% | 94.3% |
| 3944926 | 3151.1.1.0 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 | 0.59 | 43.0 | 4.38e-01 | 100.0% | 97.1% |