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IMGVR_UViG_3300025362_000743-3300025362-Ga0208647_100032312

Arc-Vir

IMGVR_UViG_3300025362_000743-3300025362-Ga0208647_100032312

Identity

Kingdom:
archaea

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-77
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.84 65.0 6.85e-01 95.9% 90.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.89e-01 98.6% 96.8%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.85e-01 100.0% 81.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.75e-01 95.9% 80.7%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.33e-01 80.8% 56.7%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.49e-01 91.8% 87.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.22e-01 95.9% 84.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.15e-01 91.8% 83.8%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.43e-01 87.7% 100.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.82e-01 95.9% 92.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 5.11e-01 82.2% 100.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.09e-01 94.5% 88.9%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 57.0 4.63e-01 98.6% 60.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.90e-01 86.3% 83.1%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 5.10e-01 82.2% 100.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.17e-01 97.3% 96.6%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.95e-01 80.8% 100.0%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 4.97e-01 80.8% 90.3%
2jtcA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.63 56.0 3.86e-01 100.0% 33.6%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 55.0 4.68e-01 100.0% 62.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.76e-01 89.0% 91.5%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.63 55.0 4.21e-01 100.0% 44.3%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.42e-01 95.9% 71.4%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 4.25e-01 98.6% 46.4%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 51.0 5.13e-01 94.5% 100.0%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.61 44.0 4.80e-01 79.5% 100.0%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 55.0 4.71e-01 100.0% 93.0%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.61 52.0 5.08e-01 98.6% 90.4%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.18e-01 100.0% 70.1%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.58 52.0 3.96e-01 100.0% 55.8%
1c7sA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 3.87e-01 94.5% 74.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.52e-01 100.0% 79.1%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.75e-01 82.2% 85.2%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.59e-01 82.2% 78.0%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.55 47.0 3.67e-01 98.6% 72.9%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 37.0 2.55e-01 74.0% 36.2%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 38.0 2.78e-01 79.5% 70.2%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.53 34.0 3.19e-01 86.3% 49.5%
1pn2D02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 36.0 3.11e-01 72.6% 94.4%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.52 39.0 3.41e-01 82.2% 77.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.51 43.0 3.84e-01 95.9% 89.9%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.20e-01 95.9% 75.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 79.0 7.61e-01 100.0% 85.0%
5047239 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.94e-01 95.9% 98.4%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.80 71.0 7.29e-01 97.3% 100.0%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 63.0 6.06e-01 91.8% 74.7%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.80e-01 94.5% 93.3%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.73e-01 94.5% 93.3%
3199259 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.77 58.0 6.10e-01 97.3% 90.8%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 5.99e-01 94.5% 85.7%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.17e-01 95.9% 82.5%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 56.0 6.02e-01 90.4% 96.7%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.75 61.0 5.79e-01 94.5% 75.3%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.75 58.0 5.22e-01 93.2% 61.0%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 65.0 6.23e-01 95.9% 90.6%
3575865 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.75 60.0 6.13e-01 98.6% 90.0%
3414912 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 56.0 4.94e-01 100.0% 56.2%
3725139 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.84e-01 90.4% 82.7%
4163661 4.1.1.446 ↗ beta barrels › SH3 › SH3 › SH3 › PF30222 0.74 61.0 6.33e-01 95.9% 97.1%
3931715 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 54.0 4.84e-01 78.1% 100.0%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.01e-01 94.5% 83.5%
3624163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.60e-01 95.9% 73.3%
3743614 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 51.0 5.55e-01 82.2% 91.7%
3627842 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.14e-01 98.6% 67.8%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.60e-01 98.6% 87.1%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.50e-01 79.5% 100.0%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.78e-01 100.0% 95.4%
4934755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.81e-01 94.5% 92.9%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.14e-01 95.9% 71.8%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 53.0 5.34e-01 100.0% 81.3%
3577224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 53.0 4.95e-01 98.6% 67.8%
3600139 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.09e-01 94.5% 69.1%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.64e-01 94.5% 100.0%
3579591 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.67 48.0 5.30e-01 90.4% 100.0%
3514191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.59e-01 98.6% 60.0%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 52.0 5.50e-01 94.5% 95.4%
3500684 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.66 56.0 5.41e-01 91.8% 82.5%
1031172 4.1.1.113 ↗ beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.66 53.0 5.36e-01 100.0% 88.9%
3699995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.49e-01 98.6% 95.7%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 50.0 5.04e-01 100.0% 81.3%
3405627 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.67e-01 94.5% 64.2%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 51.0 4.20e-01 94.5% 45.9%
3997949 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 49.0 4.62e-01 94.5% 65.6%
3195050 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 50.0 4.63e-01 98.6% 64.2%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.59e-01 95.9% 100.0%
3457106 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 51.0 5.37e-01 94.5% 95.4%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.65 58.0 4.94e-01 100.0% 90.8%
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.76e-01 98.6% 67.4%
4002985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.30e-01 94.5% 100.0%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.10e-01 98.6% 87.1%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.64 49.0 5.25e-01 94.5% 100.0%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.64 49.0 5.05e-01 94.5% 87.1%
3924760 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.12e-01 95.9% 77.8%
1144780 219.1.1.69 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.63 55.0 4.68e-01 100.0% 62.1%
3609629 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 53.0 4.88e-01 100.0% 71.6%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.77e-01 79.5% 94.8%
4118973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.61 54.0 4.58e-01 98.6% 88.3%
4234915 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.61 55.0 4.73e-01 100.0% 91.3%
160388 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.61 55.0 4.60e-01 100.0% 85.5%
4409502 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.61 54.0 4.72e-01 98.6% 96.4%
4417145 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.60 54.0 4.64e-01 100.0% 93.0%
4147685 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.60 53.0 4.65e-01 98.6% 94.5%
4137973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.60 54.0 4.72e-01 100.0% 95.5%
4279225 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.60 52.0 4.48e-01 98.6% 88.3%
4156970 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.60 52.0 4.46e-01 98.6% 88.3%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.87e-01 91.8% 96.9%
4521227 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.59 52.0 4.52e-01 98.6% 92.2%
4278559 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.59 51.0 4.51e-01 98.6% 95.5%
4422252 4.1.1.455 ↗ beta barrels › SH3 › SH3 › SH3 › DSRB 0.58 44.0 4.79e-01 86.3% 100.0%
3658750 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.57 44.0 3.76e-01 86.3% 76.0%
3607985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.26e-01 98.6% 65.7%
5013054 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 41.0 2.89e-01 90.4% 22.7%
3255946 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.91e-01 84.9% 68.8%
396031 4.22.1.1 ↗ beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.56 47.0 4.32e-01 100.0% 71.3%
3893808 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.56 49.0 3.22e-01 100.0% 65.9%
3347865 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.55 42.0 3.70e-01 86.3% 72.5%
3273672 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 41.0 3.36e-01 84.9% 55.3%
4537528 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.58e-01 94.5% 100.0%
3937682 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.53 43.0 3.58e-01 91.8% 95.7%