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IMGVR_UViG_3300025393_000009-3300025393-Ga0208041_100081826

Arc-Vir

IMGVR_UViG_3300025393_000009-3300025393-Ga0208041_100081826

Identity

Kingdom:
archaea

Quality

77.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.75 58.0 5.45e-01 100.0% 69.4%
3o58V00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.71 54.0 5.18e-01 98.0% 72.9%
1vq8U00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.68 51.0 5.08e-01 98.0% 79.2%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 41.0 3.21e-01 70.0% 31.1%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 37.0 2.80e-01 76.0% 25.0%
2nrjA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.59 50.0 3.09e-01 100.0% 60.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 46.0 4.23e-01 88.0% 74.6%
2an1D01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.58 46.0 3.46e-01 90.0% 59.4%
2jyeA01 2.10.25.160 Mainly Beta › Ribbon › Laminin › Granulin 0.58 40.0 3.85e-01 76.0% 77.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 45.0 4.14e-01 88.0% 83.3%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.56 37.0 2.78e-01 70.0% 49.3%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 3.95e-01 88.0% 73.2%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 45.0 3.06e-01 100.0% 52.8%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.56 39.0 3.26e-01 76.0% 65.6%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 2.83e-01 70.0% 50.4%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.95e-01 88.0% 77.6%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 4.00e-01 88.0% 75.8%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 2.84e-01 76.0% 41.8%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 3.78e-01 88.0% 73.0%
1b5fB00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 39.0 3.30e-01 78.0% 80.5%
5m99A02 3.90.400.10 Alpha Beta › Alpha-Beta Complex › Oligo-1,6-glucosidase; domain 2 › Oligo-1,6-glucosidase; Domain 2 0.54 38.0 3.61e-01 78.0% 61.5%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.54 38.0 3.16e-01 76.0% 71.7%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 2.63e-01 72.0% 84.4%
1u0tB01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.53 43.0 3.27e-01 98.0% 69.8%
4n13A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 3.40e-01 100.0% 50.0%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 35.0 2.68e-01 72.0% 61.9%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.52 32.0 3.47e-01 78.0% 81.1%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.50e-01 88.0% 67.5%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 33.0 3.00e-01 82.0% 44.4%
3ng2B00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 37.0 3.56e-01 100.0% 65.7%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.51 35.0 2.73e-01 74.0% 33.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3372361 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 53.0 5.68e-01 88.0% 95.0%
4025385 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.74 49.0 3.37e-01 100.0% 19.4%
3596999 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.70 54.0 5.72e-01 88.0% 93.3%
3634792 376.1.3.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-PHD-like 0.70 52.0 4.36e-01 80.0% 50.6%
5061356 2003.1.2.300 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.69 47.0 2.84e-01 74.0% 64.1%
3750265 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 52.0 4.96e-01 96.0% 95.0%
3540263 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.60 47.0 4.92e-01 96.0% 97.8%
3165734 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 35.0 3.03e-01 78.0% 38.5%
3252283 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 43.0 3.43e-01 90.0% 80.0%
3541293 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 3.43e-01 76.0% 75.6%
3261727 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.57 39.0 3.11e-01 74.0% 72.2%
3442857 109.1.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like 0.56 35.0 2.39e-01 70.0% 16.2%
3242475 101.1.2.137 ↗ alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.55 39.0 3.29e-01 76.0% 78.9%
3798928 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.55 43.0 2.62e-01 100.0% 81.9%
3519734 7523.1.1.20 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lig_chan-Glu_bd 0.55 41.0 3.02e-01 90.0% 72.9%
5049247 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.55 39.0 2.32e-01 76.0% 16.5%
3439131 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.55 39.0 3.14e-01 78.0% 64.2%
3595213 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.54 41.0 3.29e-01 92.0% 93.6%
3727485 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 38.0 2.21e-01 74.0% 19.4%
4942265 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.28e-01 76.0% 77.6%
4882674 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.54 33.0 3.75e-01 72.0% 100.0%
5044596 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.53 38.0 3.22e-01 78.0% 63.8%
3284376 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.52 39.0 3.69e-01 86.0% 89.2%
3272315 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 37.0 2.59e-01 74.0% 58.9%
3718361 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 2.51e-01 88.0% 97.4%
3990034 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.51 36.0 3.02e-01 76.0% 71.1%
3898657 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.51 34.0 2.96e-01 92.0% 45.3%
3560659 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 35.0 2.22e-01 74.0% 34.4%
3490755 375.1.1.202 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.51 37.0 4.05e-01 90.0% 100.0%
3927111 2007.2.3.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Myotub-related 0.50 42.0 2.53e-01 98.0% 12.6%
3837933 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 40.0 2.33e-01 98.0% 43.2%