←Back to structures
IMGVR_UViG_3300025393_000055-3300025393-Ga0208041_100051838
Arc-VirIMGVR_UViG_3300025393_000055-3300025393-Ga0208041_100051838
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-76
Domain cluster:
rep: IMGVR_UViG_3300029202_000229-3300029202-Ga0167843_1003598__D5-68
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.62 | 47.0 | 4.77e-01 | 84.1% | 84.3% |
| 1kyzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 3.62e-01 | 75.4% | 58.3% |
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.57 | 41.0 | 3.98e-01 | 78.3% | 73.4% |
| 2eshA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.60e-01 | 82.6% | 62.3% |
| 3tqlA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 47.0 | 3.89e-01 | 95.7% | 96.8% |
| 3delB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 48.0 | 3.81e-01 | 97.1% | 90.6% |
| 2gxgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.11e-01 | 75.4% | 41.4% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.39e-01 | 75.4% | 56.2% |
| 1t6sB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.79e-01 | 76.8% | 68.8% |
| 3mcsA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 47.0 | 3.31e-01 | 98.6% | 38.4% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 47.0 | 4.22e-01 | 98.6% | 84.5% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 47.0 | 4.19e-01 | 98.6% | 82.5% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 2.94e-01 | 72.5% | 50.4% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 46.0 | 4.03e-01 | 98.6% | 79.2% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 46.0 | 4.08e-01 | 98.6% | 83.0% |
| 5wjpA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 46.0 | 3.68e-01 | 100.0% | 95.8% |
| 2fb0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 46.0 | 4.19e-01 | 98.6% | 88.3% |
| 3bdeB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 46.0 | 4.08e-01 | 98.6% | 87.9% |
| 3okgA02 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.52 | 38.0 | 2.92e-01 | 81.2% | 93.0% |
| 2fiuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 45.0 | 4.09e-01 | 98.6% | 88.4% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 46.0 | 4.03e-01 | 100.0% | 83.2% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 46.0 | 4.04e-01 | 100.0% | 90.3% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 3.88e-01 | 98.6% | 90.3% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 45.0 | 3.95e-01 | 100.0% | 82.5% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 44.0 | 3.92e-01 | 100.0% | 82.4% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 44.0 | 3.85e-01 | 98.6% | 80.0% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 44.0 | 3.98e-01 | 100.0% | 84.7% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 44.0 | 3.90e-01 | 98.6% | 89.0% |
| 4hl9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 43.0 | 3.94e-01 | 97.1% | 87.2% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 43.0 | 3.81e-01 | 97.1% | 83.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3206274 | 101.1.9.9 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › XPA_C | 0.71 | 64.0 | 5.45e-01 | 98.6% | 67.3% |
| 4024211 | 101.1.9.9 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › XPA_C | 0.71 | 61.0 | 6.08e-01 | 92.8% | 92.9% |
| 4023303 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.69 | 61.0 | 5.32e-01 | 98.6% | 69.5% |
| 5073620 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.69 | 52.0 | 5.33e-01 | 81.2% | 87.7% |
| 3551504 | 101.1.9.9 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › XPA_C | 0.68 | 61.0 | 5.36e-01 | 98.6% | 73.0% |
| 4974744 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.66 | 45.0 | 3.37e-01 | 71.0% | 31.4% |
| 5070883 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.64 | 44.0 | 4.03e-01 | 71.0% | 57.8% |
| 4646072 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.64 | 43.0 | 3.26e-01 | 71.0% | 32.4% |
| 3376444 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.56 | 40.0 | 3.41e-01 | 75.4% | 50.4% |
| 3468397 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 43.0 | 3.64e-01 | 87.0% | 79.2% |
| 5077851 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 44.0 | 3.42e-01 | 88.4% | 58.7% |
| 2813700 | 109.2.1.9 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_48 | 0.54 | 39.0 | 2.25e-01 | 76.8% | 41.3% |
| 5036586 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.98e-01 | 88.4% | 78.8% |
| 3640935 | 3543.1.1.4 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 | 0.53 | 42.0 | 3.04e-01 | 94.2% | 45.1% |
| 4998735 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.52e-01 | 94.2% | 77.0% |
| 3958080 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 39.0 | 3.82e-01 | 81.2% | 82.7% |
| 5049078 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 44.0 | 3.47e-01 | 95.7% | 57.9% |
| 3725696 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.51 | 44.0 | 3.09e-01 | 100.0% | 39.6% |
| 4927243 | 304.4.1.30 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3291 | 0.51 | 45.0 | 3.72e-01 | 100.0% | 67.2% |
| 5075945 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 39.0 | 3.89e-01 | 82.6% | 82.9% |
| 3949124 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.51 | 45.0 | 4.06e-01 | 100.0% | 88.4% |
| 4405647 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.50 | 43.0 | 3.19e-01 | 100.0% | 47.0% |
| 3973541 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 43.0 | 3.96e-01 | 98.6% | 88.4% |
| 3936052 | 276.1.1.1 ↗ | a+b three layers › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › Ldh_2 | 0.50 | 42.0 | 2.72e-01 | 97.1% | 87.6% |
| 4952992 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.50 | 42.0 | 3.35e-01 | 97.1% | 62.0% |
D2
high
residues 84-204
Domain cluster:
rep: IMGVR_UViG_3300029202_000229-3300029202-Ga0167843_1003598__D82-195
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.60 | 41.0 | 3.90e-01 | 95.9% | 58.7% |
| 2a2fX01 | 1.10.357.30 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex subunit Sec15 C-terminal domain, N-terminal subdomain | 0.57 | 50.0 | 4.54e-01 | 98.3% | 95.8% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 37.0 | 4.01e-01 | 71.9% | 78.4% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 31.0 | 3.84e-01 | 83.5% | 88.7% |
| 4leuA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 32.0 | 2.81e-01 | 96.7% | 36.8% |
| 3ljcA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 31.0 | 3.12e-01 | 72.7% | 53.2% |
| 1ulyA02 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.54 | 38.0 | 4.12e-01 | 71.9% | 96.0% |
| 5m9dA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 33.0 | 3.21e-01 | 96.7% | 55.1% |
| 6xy4A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.52 | 34.0 | 3.47e-01 | 95.9% | 65.0% |
| 2gnoA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.52 | 33.0 | 3.56e-01 | 100.0% | 75.0% |
| 1e6vA03 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.52 | 46.0 | 3.71e-01 | 97.5% | 54.3% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.52 | 38.0 | 4.03e-01 | 100.0% | 92.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3813958 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.62 | 34.0 | 2.94e-01 | 93.4% | 35.6% |
| 3599601 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.60 | 49.0 | 4.96e-01 | 95.9% | 89.2% |
| 3425479 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.58 | 34.0 | 3.24e-01 | 100.0% | 46.9% |
| 3286382 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.57 | 40.0 | 3.77e-01 | 81.8% | 58.7% |
| 4135840 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.55 | 40.0 | 2.82e-01 | 76.0% | 27.3% |
| 3659300 | 3861.1.1.1 ↗ | alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR | 0.54 | 42.0 | 3.97e-01 | 84.3% | 92.2% |
| 3664210 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.53 | 47.0 | 3.59e-01 | 98.3% | 96.5% |
| 3274222 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.01e-01 | 88.4% | 44.2% |
| 3323882 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.51 | 38.0 | 2.77e-01 | 77.7% | 63.8% |
| 3683341 | 185.1.1.6 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl, Gliadin | 0.51 | 35.0 | 3.89e-01 | 99.2% | 93.3% |
| 3423437 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 46.0 | 4.17e-01 | 100.0% | 77.0% |
| 4092983 | 3861.1.1.1 ↗ | alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR | 0.51 | 40.0 | 3.62e-01 | 82.6% | 86.9% |