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IMGVR_UViG_3300025393_000055-3300025393-Ga0208041_100051852

Arc-Vir

IMGVR_UViG_3300025393_000055-3300025393-Ga0208041_100051852

Quality

71.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-84
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vs7A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.82 52.0 5.09e-01 91.7% 60.3%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.75 55.0 4.97e-01 94.4% 57.9%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 48.0 4.44e-01 93.1% 51.1%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.74 53.0 5.38e-01 100.0% 75.0%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.71 42.0 3.01e-01 83.3% 23.2%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.70 42.0 4.27e-01 91.7% 61.4%
1yzhB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 57.0 4.09e-01 93.1% 32.0%
3ek3A01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.67 60.0 4.53e-01 98.6% 90.5%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 51.0 3.70e-01 90.3% 31.4%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 46.0 4.18e-01 93.1% 52.5%
3bh7B02 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.67 57.0 4.82e-01 94.4% 60.3%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 38.0 3.93e-01 93.1% 62.1%
3e10A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 57.0 4.32e-01 100.0% 49.4%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 43.0 3.26e-01 75.0% 30.7%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 4.36e-01 91.7% 63.1%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 3.74e-01 93.1% 82.8%
2pjdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 42.0 3.19e-01 75.0% 49.2%
3ngqA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 42.0 2.71e-01 91.7% 16.1%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 45.0 4.24e-01 91.7% 66.7%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 43.0 3.83e-01 93.1% 53.3%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 43.0 2.89e-01 93.1% 19.9%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.57 43.0 3.42e-01 94.4% 41.1%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.56 47.0 4.65e-01 100.0% 86.7%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.71e-01 93.1% 57.3%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 3.02e-01 84.7% 36.1%
4pwyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 47.0 3.18e-01 93.1% 26.8%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 3.94e-01 93.1% 70.3%
3mb5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 49.0 3.53e-01 100.0% 85.5%
2uyoA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 2.80e-01 83.3% 91.6%
4nehA05 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.53 45.0 3.37e-01 93.1% 38.8%
4nmlA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 44.0 4.09e-01 94.4% 76.7%
1ow1A00 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.52 43.0 3.44e-01 98.6% 67.1%
4qkyA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 42.0 4.18e-01 93.1% 90.5%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.35e-01 94.4% 66.9%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4419954 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.94 55.0 5.80e-01 93.1% 66.2%
5008041 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.90 59.0 4.64e-01 93.1% 36.3%
3965385 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.89 55.0 5.65e-01 90.3% 65.7%
5013331 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.86 55.0 5.80e-01 90.3% 72.3%
4934172 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.84 55.0 5.65e-01 94.4% 70.0%
2982277 327.16.1.10 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 0.84 52.0 5.59e-01 93.1% 73.0%
4996403 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.81 60.0 5.47e-01 91.7% 61.1%
4979991 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.80 54.0 4.76e-01 90.3% 50.0%
4412539 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.78 53.0 3.91e-01 93.1% 29.1%
4971395 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.77 56.0 5.02e-01 91.7% 56.8%
4464568 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.77 54.0 4.74e-01 93.1% 52.0%
3963926 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.76 59.0 5.69e-01 95.8% 73.4%
4992480 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 49.0 4.52e-01 93.1% 52.2%
4998393 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.76 55.0 4.72e-01 93.1% 50.0%
3969151 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.75 60.0 5.76e-01 97.2% 75.0%
5031636 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.74 55.0 4.58e-01 93.1% 46.7%
4975577 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.73 54.0 3.95e-01 93.1% 31.4%
3385565 320.1.1.16 a+b two layers › R3H domain-like › R3H domain › R3H domain › HP0268 0.73 49.0 4.77e-01 90.3% 64.1%
3602142 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.72 54.0 4.68e-01 100.0% 53.3%
5030783 242.1.1.3 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.72 51.0 4.63e-01 91.7% 55.8%
4993583 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.71 55.0 4.58e-01 93.1% 49.2%
3955114 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.69 58.0 4.61e-01 93.1% 47.4%
3952678 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 52.0 4.82e-01 93.1% 64.4%
4268592 2003.1.5.23 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 0.68 58.0 4.14e-01 93.1% 33.5%
3969285 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.68 55.0 5.19e-01 100.0% 72.9%
5066391 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 54.0 4.25e-01 93.1% 43.6%
4046539 2003.1.5.23 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 0.67 56.0 3.94e-01 93.1% 30.0%
4260992 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.66 51.0 3.70e-01 91.7% 31.1%
4933369 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.66 55.0 4.41e-01 93.1% 48.5%
4999899 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 57.0 4.65e-01 100.0% 53.6%
4406356 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 55.0 4.49e-01 93.1% 55.2%
5031916 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.63 54.0 4.46e-01 100.0% 53.6%
None 0.62 52.0 3.77e-01 90.3% 86.5%
4051570 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.61 43.0 3.22e-01 75.0% 34.2%
4986411 2003.1.5.179 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.61 42.0 3.11e-01 73.6% 29.3%
None 0.60 51.0 3.72e-01 91.7% 85.4%
3298862 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.60 50.0 3.99e-01 94.4% 56.4%
3969121 10.12.1.68 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF1826 0.59 43.0 3.21e-01 80.6% 82.8%
3216163 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 36.0 3.31e-01 77.8% 46.3%
3506561 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 34.0 3.39e-01 77.8% 54.7%
3706885 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.57 48.0 4.38e-01 100.0% 68.0%
4306578 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 51.0 3.48e-01 100.0% 77.3%
3599291 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 48.0 3.24e-01 100.0% 31.9%
3478192 2003.1.5.146 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GuanidinoAc_N-MeTrfase 0.57 50.0 3.49e-01 100.0% 81.6%
3447640 2003.1.5.146 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GuanidinoAc_N-MeTrfase 0.56 50.0 3.51e-01 100.0% 74.3%
3225950 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.56 50.0 4.24e-01 100.0% 79.2%
3965981 10.12.1.6 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AIM24 0.56 43.0 2.96e-01 91.7% 25.1%
4277039 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.56 39.0 2.96e-01 75.0% 45.1%
5028052 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.55 48.0 3.36e-01 100.0% 69.2%
3696051 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 47.0 3.74e-01 94.4% 64.8%
3515810 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 47.0 3.17e-01 100.0% 48.9%
3658918 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 45.0 4.04e-01 94.4% 67.6%
3335699 304.112.1.3 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN 0.54 38.0 3.36e-01 97.2% 50.5%
4451470 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.54 47.0 3.92e-01 100.0% 70.0%
3693358 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.54 46.0 4.07e-01 94.4% 64.8%
4335295 11.1.1.322 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ITGAX-like_Ig_3 0.54 45.0 3.78e-01 91.7% 56.7%
3555669 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.53 47.0 4.00e-01 100.0% 75.0%
3879806 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.53 42.0 4.00e-01 90.3% 94.4%
4000750 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.53 39.0 2.88e-01 81.9% 85.2%
3733658 3468.1.1.0 a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.53 44.0 3.48e-01 94.4% 64.5%
3275591 2011.1.1.21 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 0.52 42.0 2.68e-01 88.9% 33.1%
3579336 304.5.1.23 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V_ATPase_I 0.52 39.0 3.41e-01 80.6% 80.9%
3601476 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 44.0 2.91e-01 100.0% 72.1%
4026551 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.51 43.0 3.79e-01 95.8% 63.6%
3479207 328.6.1.2 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC 0.50 42.0 2.86e-01 94.4% 24.7%