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IMGVR_UViG_3300025393_000055-3300025393-Ga0208041_100051859
Arc-VirIMGVR_UViG_3300025393_000055-3300025393-Ga0208041_100051859
Identity
- Kingdom:
- archaea
Quality
84.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-73
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.69 | 42.0 | 4.43e-01 | 91.0% | 67.2% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.65 | 48.0 | 4.18e-01 | 79.1% | 87.5% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 54.0 | 4.56e-01 | 91.0% | 87.4% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.65 | 52.0 | 4.07e-01 | 88.1% | 74.7% |
| 1yudA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 48.0 | 3.69e-01 | 80.6% | 76.8% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 53.0 | 4.52e-01 | 92.5% | 87.5% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.64 | 49.0 | 5.04e-01 | 92.5% | 88.9% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 52.0 | 4.34e-01 | 92.5% | 88.3% |
| 3nqhA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.63 | 51.0 | 3.34e-01 | 91.0% | 30.4% |
| 2v14A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.63 | 43.0 | 3.46e-01 | 71.6% | 97.0% |
| 3fljA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 52.0 | 4.11e-01 | 92.5% | 70.2% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.61 | 41.0 | 3.51e-01 | 71.6% | 96.6% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 51.0 | 4.62e-01 | 97.0% | 69.2% |
| 2hzgB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 42.0 | 3.31e-01 | 73.1% | 76.9% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 45.0 | 3.93e-01 | 80.6% | 88.2% |
| 4gl6A01 | 3.10.450.570 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain | 0.60 | 49.0 | 4.66e-01 | 92.5% | 89.0% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 51.0 | 3.34e-01 | 94.0% | 39.1% |
| 1s1dA00 | 2.120.10.100 | Mainly Beta › 6 Propeller › Neuraminidase › Apyrase | 0.59 | 50.0 | 3.19e-01 | 92.5% | 23.7% |
| 2xglA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.59 | 46.0 | 4.23e-01 | 88.1% | 80.2% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 52.0 | 4.01e-01 | 100.0% | 58.9% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 47.0 | 4.69e-01 | 89.6% | 89.9% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 47.0 | 4.19e-01 | 91.0% | 91.8% |
| 3cyjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 40.0 | 3.32e-01 | 73.1% | 86.9% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.58 | 48.0 | 3.60e-01 | 94.0% | 75.0% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 49.0 | 4.47e-01 | 97.0% | 74.2% |
| 2chrA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 39.0 | 3.25e-01 | 73.1% | 86.6% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 45.0 | 3.23e-01 | 92.5% | 70.2% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 49.0 | 4.88e-01 | 97.0% | 91.5% |
| 3nynA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 46.0 | 3.58e-01 | 91.0% | 57.8% |
| 3jclA01 | 2.60.120.960 | Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain | 0.56 | 44.0 | 3.00e-01 | 91.0% | 65.2% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 49.0 | 4.86e-01 | 97.0% | 94.2% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 46.0 | 4.08e-01 | 94.0% | 89.1% |
| 2w4oA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 46.0 | 4.44e-01 | 94.0% | 96.1% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.54 | 47.0 | 3.97e-01 | 100.0% | 85.3% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.54 | 42.0 | 3.74e-01 | 91.0% | 65.4% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 40.0 | 3.97e-01 | 83.6% | 93.0% |
| 3t4nA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 41.0 | 3.66e-01 | 92.5% | 59.4% |
| 2ehgA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 36.0 | 2.89e-01 | 73.1% | 100.0% |
| 3ci0J01 | 3.10.610.10 | Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like | 0.52 | 41.0 | 3.67e-01 | 92.5% | 73.1% |
| 3n7lA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 42.0 | 3.17e-01 | 95.5% | 73.9% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.52 | 44.0 | 4.13e-01 | 98.5% | 86.2% |
| 3oggA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 43.0 | 3.27e-01 | 97.0% | 70.4% |
| 2nyyA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 40.0 | 3.02e-01 | 89.6% | 84.1% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 35.0 | 2.96e-01 | 73.1% | 86.5% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 42.0 | 4.15e-01 | 95.5% | 95.8% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 3.41e-01 | 100.0% | 74.3% |
| 7u6rA01 | 2.60.120.960 | Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain | 0.50 | 39.0 | 2.72e-01 | 91.0% | 66.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946882 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 51.0 | 5.53e-01 | 100.0% | 98.2% |
| 4 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.64 | 47.0 | 4.11e-01 | 79.1% | 87.5% |
| 3554073 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.64 | 44.0 | 3.57e-01 | 71.6% | 86.2% |
| 3562700 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.63 | 43.0 | 3.44e-01 | 70.1% | 92.6% |
| 3970394 | 4252.1.1.10 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 | 0.63 | 49.0 | 4.04e-01 | 86.6% | 82.8% |
| 4942589 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.63 | 49.0 | 4.92e-01 | 86.6% | 91.4% |
| 3198523 | 5.1.3.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase | 0.61 | 49.0 | 3.04e-01 | 89.6% | 18.9% |
| 4579550 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 52.0 | 4.22e-01 | 97.0% | 84.6% |
| 4240105 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 52.0 | 4.36e-01 | 97.0% | 95.7% |
| 3271234 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 38.0 | 4.45e-01 | 76.1% | 95.6% |
| 4936151 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.60 | 53.0 | 4.03e-01 | 100.0% | 61.3% |
| 3739762 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.60 | 52.0 | 4.36e-01 | 100.0% | 97.5% |
| None | — | 0.60 | 50.0 | 3.21e-01 | 91.0% | 35.9% | |
| 3820010 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.60 | 52.0 | 4.02e-01 | 100.0% | 56.9% |
| 3303563 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.60 | 53.0 | 4.03e-01 | 100.0% | 56.9% |
| 3403381 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 45.0 | 3.98e-01 | 82.1% | 60.0% |
| 3208314 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.59 | 48.0 | 2.82e-01 | 91.0% | 16.2% |
| 4529819 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 52.0 | 4.17e-01 | 100.0% | 93.3% |
| 4667824 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 51.0 | 4.24e-01 | 100.0% | 91.1% |
| 4609098 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.59 | 52.0 | 4.16e-01 | 100.0% | 83.7% |
| 3697771 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 46.0 | 2.87e-01 | 92.5% | 17.4% |
| 4027070 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 46.0 | 3.29e-01 | 89.6% | 52.7% |
| 5034702 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 49.0 | 3.83e-01 | 100.0% | 57.7% |
| 3993443 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 44.0 | 4.30e-01 | 97.0% | 80.0% |
| 3250601 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 49.0 | 3.19e-01 | 100.0% | 36.7% |
| 4974776 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.55 | 47.0 | 3.74e-01 | 100.0% | 57.2% |
| 3959606 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 46.0 | 3.55e-01 | 100.0% | 53.8% |
| 4617128 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.54 | 41.0 | 3.58e-01 | 88.1% | 60.9% |
| 5010129 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 40.0 | 4.34e-01 | 97.0% | 98.2% |
| 3730099 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 44.0 | 4.31e-01 | 95.5% | 90.5% |
| 3771653 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 45.0 | 3.94e-01 | 97.0% | 63.8% |
| 5021439 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 44.0 | 4.32e-01 | 97.0% | 85.3% |
| 4114035 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.52 | 36.0 | 2.82e-01 | 74.6% | 93.3% |
| 5044050 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.52 | 42.0 | 3.20e-01 | 89.6% | 48.5% |
| 3586428 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.52 | 44.0 | 3.80e-01 | 97.0% | 84.4% |
| 4957957 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 46.0 | 3.34e-01 | 100.0% | 45.8% |
| 5038407 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 42.0 | 3.29e-01 | 91.0% | 42.0% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.51 | 37.0 | 3.61e-01 | 82.1% | 73.8% |
| 4988502 | 375.1.1.298 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM | 0.51 | 33.0 | 3.84e-01 | 70.1% | 100.0% |
| 3799335 | 844.1.1.4 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase | 0.51 | 42.0 | 3.09e-01 | 95.5% | 96.5% |
| 4862964 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.51 | 39.0 | 2.91e-01 | 85.1% | 42.2% |
| 4889562 | 10.1.1.86 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY, RyR | 0.50 | 35.0 | 2.48e-01 | 73.1% | 37.1% |
| 3481273 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.50 | 43.0 | 3.75e-01 | 98.5% | 64.8% |