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IMGVR_UViG_3300025408_000007-3300025408-Ga0208462_100056142

Arc-Vir

IMGVR_UViG_3300025408_000007-3300025408-Ga0208462_100056142

Identity

Kingdom:
archaea

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-115
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 51.0 4.90e-01 86.6% 98.7%
4kpnA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.63 52.0 3.39e-01 92.5% 39.0%
7ylvH01 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.62 34.0 3.43e-01 92.5% 52.2%
3crvA02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.60 51.0 4.43e-01 97.0% 83.3%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.59 48.0 4.39e-01 94.0% 70.5%
2fiyA00 3.90.1670.10 Alpha Beta › Alpha-Beta Complex › FdhE-like fold › FdhE-like domain 0.57 47.0 3.22e-01 98.5% 34.7%
4dqkA02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.56 46.0 4.03e-01 100.0% 92.3%
6k41R00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 42.0 2.97e-01 88.1% 90.5%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.55 43.0 4.30e-01 91.0% 87.5%
1f20A02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.55 46.0 3.61e-01 100.0% 80.5%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.54 44.0 4.34e-01 91.0% 85.1%
6ks6G02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.54 39.0 3.51e-01 80.6% 76.9%
5hfiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 40.0 3.00e-01 85.1% 30.7%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.54 41.0 4.24e-01 88.1% 96.9%
7pjdC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 42.0 3.32e-01 95.5% 72.0%
2bpoA02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.53 43.0 3.54e-01 100.0% 82.1%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.52 41.0 3.73e-01 91.0% 87.5%
2lhiA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 42.0 3.27e-01 97.0% 50.6%
2ccmA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 41.0 3.16e-01 95.5% 66.8%
2n1fA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 44.0 4.09e-01 100.0% 84.3%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.52 34.0 3.38e-01 70.1% 62.2%
1f6fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 46.0 3.34e-01 98.5% 61.7%
7a8rA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.56e-01 74.6% 38.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971010 3009.1.1.1 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.66 51.0 3.71e-01 85.1% 32.3%
5028679 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 51.0 4.39e-01 85.1% 73.8%
3994165 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.64 50.0 4.79e-01 86.6% 87.5%
5001312 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.62 51.0 4.84e-01 91.0% 93.8%
3602512 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.61 49.0 4.62e-01 91.0% 89.4%
3900194 108.1.1.36 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_14 0.61 49.0 4.76e-01 92.5% 100.0%
3988566 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 47.0 4.72e-01 85.1% 85.7%
3596507 3687.1.1.0 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain 0.58 49.0 4.10e-01 100.0% 96.2%
4000007 108.1.1.146 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30344 0.58 43.0 3.81e-01 79.1% 65.3%
3223091 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 41.0 3.35e-01 94.0% 38.5%
4961899 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.57 45.0 4.56e-01 85.1% 98.5%
4601630 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 46.0 3.50e-01 92.5% 61.8%
1788857 2004.1.1.444 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_PrkA 0.56 44.0 2.99e-01 86.6% 66.4%
3262552 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.56 38.0 3.69e-01 71.6% 89.3%
3519127 4979.2.1.1 ↗ alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD 0.55 45.0 4.30e-01 91.0% 77.5%
3518361 3687.1.1.1 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › FAD_binding_1 0.55 46.0 3.90e-01 100.0% 98.4%
3906253 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 43.0 3.74e-01 92.5% 73.3%
3251369 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.54 43.0 3.78e-01 86.6% 91.0%
3577433 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.54 45.0 3.75e-01 94.0% 75.8%
3783718 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.54 39.0 3.87e-01 79.1% 78.6%
4001630 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.53 45.0 3.78e-01 94.0% 79.1%
3810390 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.53 38.0 3.48e-01 77.6% 55.3%
4521579 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.53 42.0 3.18e-01 94.0% 77.4%
3721993 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 40.0 2.77e-01 88.1% 67.5%
2392654 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.51 43.0 3.39e-01 98.5% 71.8%
4997861 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.51 39.0 3.63e-01 89.6% 71.6%
None — 0.51 37.0 3.36e-01 79.1% 61.1%