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IMGVR_UViG_3300025446_000061-3300025446-Ga0208038_10011524
Arc-VirIMGVR_UViG_3300025446_000061-3300025446-Ga0208038_10011524
Identity
- Kingdom:
- archaea
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-64
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.69 | 53.0 | 4.90e-01 | 100.0% | 64.9% |
| 2otrA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.66 | 45.0 | 3.93e-01 | 74.6% | 46.7% |
| 2pd0A01 | 3.30.2310.50 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 | 0.64 | 49.0 | 3.87e-01 | 83.1% | 62.5% |
| 3it5G00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.61 | 46.0 | 3.28e-01 | 81.4% | 40.6% |
| 6fcvB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 49.0 | 3.07e-01 | 93.2% | 22.7% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.59 | 51.0 | 4.68e-01 | 100.0% | 93.7% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 49.0 | 3.08e-01 | 100.0% | 39.1% |
| 2x8fA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 47.0 | 3.02e-01 | 94.9% | 28.6% |
| 2kwaA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.57 | 45.0 | 3.90e-01 | 91.5% | 90.1% |
| 1c9rA04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 44.0 | 3.76e-01 | 89.8% | 51.4% |
| 2gu1A03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.57 | 42.0 | 3.35e-01 | 81.4% | 53.0% |
| 2ymsB00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 47.0 | 4.38e-01 | 93.2% | 86.5% |
| 4bh5A00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.56 | 41.0 | 3.31e-01 | 81.4% | 53.8% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.56 | 42.0 | 3.38e-01 | 86.4% | 57.0% |
| 2xu8A00 | 3.90.70.190 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) | 0.56 | 43.0 | 3.59e-01 | 89.8% | 55.2% |
| 3mcbB00 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.56 | 38.0 | 3.89e-01 | 74.6% | 84.5% |
| 2gprA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.55 | 38.0 | 2.93e-01 | 74.6% | 50.6% |
| 4nsxA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.03e-01 | 100.0% | 24.5% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.55 | 40.0 | 4.25e-01 | 79.7% | 98.1% |
| 1es6A02 | 2.60.510.10 | Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein | 0.54 | 43.0 | 3.72e-01 | 91.5% | 56.6% |
| 1bprA00 | 2.60.34.10 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 | 0.54 | 43.0 | 3.18e-01 | 93.2% | 65.3% |
| 1ueqA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 43.0 | 3.51e-01 | 94.9% | 57.7% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 42.0 | 3.28e-01 | 89.8% | 48.2% |
| 4gs5A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 35.0 | 2.42e-01 | 86.4% | 16.8% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 43.0 | 3.46e-01 | 100.0% | 57.2% |
| 5xrwA00 | 2.30.330.10 | Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like | 0.52 | 35.0 | 3.29e-01 | 72.9% | 87.3% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 42.0 | 3.68e-01 | 98.3% | 86.0% |
| 2bcoA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 43.0 | 2.83e-01 | 100.0% | 81.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3580369 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.65 | 46.0 | 3.37e-01 | 79.7% | 27.0% |
| 5028034 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.65 | 52.0 | 4.60e-01 | 98.3% | 60.0% |
| 3649691 | 2004.1.1.299 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 | 0.65 | 55.0 | 3.69e-01 | 100.0% | 98.8% |
| 5067796 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.65 | 53.0 | 3.35e-01 | 96.6% | 24.5% |
| 3520733 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.62 | 48.0 | 2.95e-01 | 86.4% | 29.5% |
| 3576335 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.26e-01 | 100.0% | 22.4% |
| 5023640 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.60 | 38.0 | 3.55e-01 | 74.6% | 49.4% |
| 3273300 | 3270.1.1.1 ↗ | a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 | 0.59 | 50.0 | 4.47e-01 | 100.0% | 94.4% |
| 3672145 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.59 | 49.0 | 4.10e-01 | 100.0% | 67.0% |
| 3337433 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.58 | 46.0 | 4.24e-01 | 91.5% | 76.2% |
| 3626487 | 101.1.2.194 ↗ | alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH | 0.56 | 44.0 | 3.65e-01 | 93.2% | 64.8% |
| 4135153 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.56 | 46.0 | 4.39e-01 | 100.0% | 92.0% |
| 3355734 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.55 | 43.0 | 3.68e-01 | 91.5% | 50.0% |
| 3841070 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 45.0 | 3.88e-01 | 94.9% | 72.0% |
| 3331262 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.55 | 45.0 | 3.98e-01 | 96.6% | 92.6% |
| 3820181 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.55 | 46.0 | 3.66e-01 | 100.0% | 63.7% |
| 4000033 | 220.1.1.119 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th | 0.55 | 44.0 | 3.59e-01 | 89.8% | 62.6% |
| 3309356 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 46.0 | 2.86e-01 | 100.0% | 26.3% |
| 4944463 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 43.0 | 3.50e-01 | 89.8% | 43.3% |
| 3918404 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 43.0 | 4.02e-01 | 94.9% | 88.7% |
| 4653783 | 101.1.2.194 ↗ | alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH | 0.54 | 43.0 | 3.47e-01 | 100.0% | 93.1% |
| 3712602 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.53 | 44.0 | 3.52e-01 | 100.0% | 54.1% |
| 3415735 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.53 | 44.0 | 3.91e-01 | 100.0% | 74.7% |
| 3254677 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.53 | 44.0 | 3.73e-01 | 100.0% | 77.3% |
| 4421418 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.53 | 43.0 | 3.61e-01 | 98.3% | 68.7% |
| 3265841 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.52 | 42.0 | 3.70e-01 | 100.0% | 76.0% |
| 3935911 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.52 | 35.0 | 2.99e-01 | 72.9% | 70.9% |
| 3205363 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.52 | 42.0 | 2.88e-01 | 100.0% | 64.5% |
| 3294459 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 41.0 | 3.47e-01 | 91.5% | 61.9% |
| 3601941 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 39.0 | 3.10e-01 | 89.8% | 66.2% |
| 3753910 | 216.1.1.10 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 | 0.51 | 36.0 | 3.09e-01 | 79.7% | 90.9% |
| 4183729 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 40.0 | 3.10e-01 | 100.0% | 37.2% |
D2
high
residues 76-124
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21841.2 best | DUF6900 | 76.1 | 2.20e-21 | 100.0% | 92.3% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xocA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.74 | 44.0 | 2.83e-01 | 100.0% | 12.9% |
| 1ivhA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 50.0 | 3.57e-01 | 100.0% | 27.7% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.65 | 56.0 | 4.88e-01 | 100.0% | 91.1% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 46.0 | 4.09e-01 | 98.0% | 50.7% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.64 | 48.0 | 3.90e-01 | 100.0% | 42.1% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.64 | 52.0 | 3.87e-01 | 98.0% | 35.2% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 41.0 | 3.83e-01 | 91.8% | 56.7% |
| 3vkhB01 | 1.10.287.2620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 46.0 | 4.40e-01 | 100.0% | 76.6% |
| 5c9iA02 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.57 | 49.0 | 3.51e-01 | 100.0% | 34.2% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 46.0 | 3.44e-01 | 95.9% | 41.4% |
| 2pg0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 46.0 | 3.29e-01 | 100.0% | 53.0% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 44.0 | 4.42e-01 | 98.0% | 92.2% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 45.0 | 4.12e-01 | 100.0% | 92.3% |
| 3s6pG00 | 6.10.140.1660 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 42.0 | 3.72e-01 | 100.0% | 62.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3402544 | 137.1.1.12 ↗ | alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › SCHIP-1_C | 0.73 | 66.0 | 5.21e-01 | 100.0% | 51.6% |
| 3728974 | 7568.1.1.4 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 | 0.71 | 46.0 | 3.25e-01 | 98.0% | 22.8% |
| 3954048 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.67 | 43.0 | 3.95e-01 | 98.0% | 50.8% |
| 4542622 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.63 | 53.0 | 4.29e-01 | 100.0% | 50.0% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.53 | 39.0 | 3.58e-01 | 83.7% | 64.3% |
| 4934328 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 43.0 | 3.79e-01 | 98.0% | 61.4% |
| 4881814 | 5104.1.1.2 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 | 0.53 | 37.0 | 3.75e-01 | 85.7% | 76.5% |
| 3962193 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.70e-01 | 98.0% | 61.4% |