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IMGVR_UViG_3300025446_000097-3300025446-Ga0208038_10008231
Arc-VirIMGVR_UViG_3300025446_000097-3300025446-Ga0208038_10008231
Identity
- Kingdom:
- archaea
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-79
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r6bX04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.92 | 86.0 | 5.97e-01 | 100.0% | 34.5% |
| 5vjhB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.88 | 80.0 | 5.48e-01 | 100.0% | 31.0% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.67 | 49.0 | 4.07e-01 | 77.6% | 61.5% |
| 1l8nA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.62 | 49.0 | 3.54e-01 | 89.6% | 81.0% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 52.0 | 4.44e-01 | 98.5% | 75.9% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 3.96e-01 | 77.6% | 92.4% |
| 4htpB00 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.60 | 47.0 | 3.35e-01 | 88.1% | 54.1% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.59 | 49.0 | 4.56e-01 | 100.0% | 74.2% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.58 | 44.0 | 3.79e-01 | 82.1% | 80.6% |
| 3jvoA00 | 1.10.3230.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein | 0.58 | 45.0 | 4.04e-01 | 85.1% | 72.9% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.58 | 43.0 | 4.67e-01 | 91.0% | 96.4% |
| 1e94E03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 43.0 | 3.74e-01 | 80.6% | 81.1% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 47.0 | 3.28e-01 | 100.0% | 51.5% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 51.0 | 4.52e-01 | 100.0% | 72.2% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.57 | 50.0 | 4.61e-01 | 100.0% | 78.2% |
| 1rx0C01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 44.0 | 3.71e-01 | 88.1% | 68.3% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.55 | 47.0 | 4.59e-01 | 95.5% | 98.6% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 46.0 | 4.35e-01 | 100.0% | 91.6% |
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 46.0 | 3.09e-01 | 94.0% | 35.5% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 39.0 | 3.58e-01 | 77.6% | 81.7% |
| 1u9lB00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.54 | 44.0 | 4.43e-01 | 98.5% | 88.6% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 42.0 | 4.04e-01 | 100.0% | 75.6% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 43.0 | 3.44e-01 | 98.5% | 80.4% |
| 7d3uC01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 38.0 | 3.36e-01 | 80.6% | 85.0% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 37.0 | 3.41e-01 | 76.1% | 62.5% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.51 | 40.0 | 3.88e-01 | 88.1% | 90.7% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 42.0 | 3.77e-01 | 100.0% | 67.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.95 | 90.0 | 5.97e-01 | 100.0% | 29.8% | |
| 3979234 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.94 | 90.0 | 5.98e-01 | 100.0% | 30.5% |
| 3291637 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.93 | 88.0 | 5.58e-01 | 100.0% | 23.9% |
| 4228388 | 2004.1.1.258 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 | 0.93 | 88.0 | 5.22e-01 | 100.0% | 16.8% |
| 3961063 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.93 | 88.0 | 5.54e-01 | 100.0% | 23.5% |
| 3513398 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.93 | 87.0 | 6.69e-01 | 100.0% | 49.6% |
| 4391279 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.92 | 86.0 | 5.77e-01 | 100.0% | 29.8% |
| 3971117 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.91 | 85.0 | 5.54e-01 | 100.0% | 30.2% |
| 3839304 | 2004.1.1.153 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 | 0.91 | 85.0 | 5.78e-01 | 100.0% | 31.9% |
| 3233827 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.68 | 49.0 | 4.08e-01 | 77.6% | 84.2% |
| 3260341 | 610.2.1.1 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical | 0.64 | 46.0 | 4.06e-01 | 77.6% | 72.4% |
| 4995939 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.64 | 47.0 | 4.10e-01 | 100.0% | 50.5% |
| 3418158 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.64 | 55.0 | 3.86e-01 | 100.0% | 53.3% |
| 4282588 | 5001.1.1.64 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PalH | 0.62 | 55.0 | 3.76e-01 | 100.0% | 55.6% |
| 3263029 | 5050.1.1.8 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 | 0.62 | 45.0 | 3.06e-01 | 79.1% | 64.0% |
| 3590231 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.61 | 52.0 | 4.58e-01 | 98.5% | 72.4% |
| 3646792 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.60 | 43.0 | 3.10e-01 | 77.6% | 53.2% |
| 3173245 | 610.2.1.0 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 | 0.59 | 43.0 | 2.90e-01 | 79.1% | 25.8% |
| 1309419 | 2004.1.1.49 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase | 0.59 | 50.0 | 3.04e-01 | 100.0% | 17.2% |
| 3925979 | 109.4.1.2550 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC8, TPR_8, TPR_17 | 0.59 | 47.0 | 2.82e-01 | 91.0% | 29.5% |
| 3783331 | 509.1.1.9 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 | 0.59 | 48.0 | 4.52e-01 | 100.0% | 75.3% |
| 3308318 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.58 | 41.0 | 3.39e-01 | 77.6% | 57.7% |
| 3412360 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 50.0 | 3.07e-01 | 100.0% | 97.8% |
| 3390382 | 174.1.1.29 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 | 0.53 | 45.0 | 3.50e-01 | 98.5% | 80.6% |
| 3240600 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.53 | 44.0 | 3.59e-01 | 100.0% | 46.4% |
| 4983940 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 45.0 | 3.64e-01 | 98.5% | 51.1% |
| 3178422 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 2.44e-01 | 91.0% | 73.9% |
| 3695339 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.50 | 42.0 | 3.35e-01 | 100.0% | 68.4% |
D2
high
residues 90-137
Domain cluster:
representative