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IMGVR_UViG_3300025459_000250-3300025459-Ga0208689_10034063
Arc-VirIMGVR_UViG_3300025459_000250-3300025459-Ga0208689_10034063
Identity
- Kingdom:
- archaea
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-73
Domain cluster:
rep: gwa1_scaffold_31_prodigal-single.1__X__X__00034__D7-87
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 74.0 | 6.66e-01 | 100.0% | 83.1% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.73 | 64.0 | 5.85e-01 | 100.0% | 98.9% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 43.0 | 3.56e-01 | 72.1% | 64.3% |
| 2h5fB00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.63 | 40.0 | 3.95e-01 | 80.9% | 59.5% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 44.0 | 4.59e-01 | 75.0% | 80.6% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.62 | 42.0 | 3.96e-01 | 98.5% | 57.8% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 42.0 | 3.68e-01 | 70.6% | 52.0% |
| 1aolA00 | 3.90.310.10 | Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain | 0.62 | 43.0 | 2.97e-01 | 72.1% | 97.4% |
| 3m7aA01 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.60 | 45.0 | 3.59e-01 | 92.6% | 39.7% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.59 | 42.0 | 3.96e-01 | 75.0% | 76.8% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 44.0 | 3.60e-01 | 80.9% | 69.0% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.57 | 49.0 | 3.48e-01 | 100.0% | 82.7% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 38.0 | 3.21e-01 | 70.6% | 57.7% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.55 | 41.0 | 3.56e-01 | 80.9% | 58.5% |
| 1oj5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 36.0 | 3.08e-01 | 70.6% | 98.1% |
| 3aleA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 41.0 | 3.31e-01 | 89.7% | 56.6% |
| 3tqdA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 44.0 | 3.01e-01 | 97.1% | 32.9% |
| 2yu4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 36.0 | 3.33e-01 | 77.9% | 66.0% |
| 2p8tA02 | 3.30.1360.30 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain | 0.50 | 44.0 | 3.82e-01 | 100.0% | 87.2% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.84 | 77.0 | 6.94e-01 | 98.5% | 85.6% |
| 4945828 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.82 | 77.0 | 6.93e-01 | 100.0% | 87.8% |
| 4457400 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.82 | 77.0 | 6.50e-01 | 100.0% | 77.1% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.82 | 75.0 | 6.88e-01 | 98.5% | 85.9% |
| 4468826 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.82 | 75.0 | 6.62e-01 | 98.5% | 80.0% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.82 | 76.0 | 6.84e-01 | 100.0% | 86.7% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.81 | 76.0 | 6.65e-01 | 100.0% | 81.1% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.81 | 75.0 | 6.91e-01 | 100.0% | 88.2% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.81 | 75.0 | 6.75e-01 | 100.0% | 86.7% |
| 5052958 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.78 | 71.0 | 6.72e-01 | 100.0% | 83.7% |
| 4991529 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.73 | 58.0 | 6.10e-01 | 92.6% | 96.7% |
| 3419007 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 65.0 | 5.46e-01 | 100.0% | 69.6% |
| 5041477 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.72 | 57.0 | 6.03e-01 | 91.2% | 96.7% |
| 5034126 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.72 | 57.0 | 6.07e-01 | 91.2% | 96.7% |
| 4945327 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.70 | 59.0 | 5.89e-01 | 97.1% | 90.0% |
| 5074538 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.69 | 56.0 | 5.92e-01 | 95.6% | 98.3% |
| 4186535 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.66 | 60.0 | 5.17e-01 | 100.0% | 100.0% |
| 3639475 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 49.0 | 3.79e-01 | 85.3% | 55.5% |
| 3970564 | 11.1.1.1362 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3426 | 0.63 | 42.0 | 3.74e-01 | 70.6% | 64.0% |
| 3993255 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 44.0 | 4.49e-01 | 79.4% | 76.9% |
| 5048177 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.62 | 48.0 | 5.07e-01 | 91.2% | 96.7% |
| 3783961 | 901.1.1.1 ↗ | few secondary structure elements › ADA_N-like domain › ADA_N-like domain › ADA_N-like domain › Ada_Zn_binding | 0.61 | 39.0 | 3.95e-01 | 95.6% | 64.3% |
| 5035635 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.60 | 47.0 | 3.95e-01 | 97.1% | 48.7% |
| 4941672 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.60 | 47.0 | 3.89e-01 | 92.6% | 46.4% |
| 3445562 | 10.32.1.212 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind | 0.60 | 41.0 | 2.97e-01 | 72.1% | 34.0% |
| 5054765 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.59 | 47.0 | 3.88e-01 | 92.6% | 47.6% |
| 3527580 | 220.1.1.145 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP | 0.58 | 44.0 | 4.88e-01 | 83.8% | 100.0% |
| 5027350 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.56 | 40.0 | 3.19e-01 | 75.0% | 61.6% |
| 3881976 | 375.1.1.142 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › VCIP135_N | 0.55 | 40.0 | 4.00e-01 | 79.4% | 75.7% |
| 4250283 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.54 | 45.0 | 3.92e-01 | 91.2% | 100.0% |
| 4011129 | 221.1.1.46 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg | 0.53 | 37.0 | 3.32e-01 | 76.5% | 54.3% |
| 3749186 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.52 | 39.0 | 2.88e-01 | 86.8% | 69.3% |
| 5027968 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.51 | 40.0 | 3.33e-01 | 82.4% | 89.6% |
| 3885393 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.51 | 37.0 | 3.07e-01 | 82.4% | 99.3% |
| 3705469 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 45.0 | 3.41e-01 | 98.5% | 69.4% |
| 3301125 | 220.1.1.21 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 | 0.50 | 44.0 | 3.57e-01 | 95.6% | 77.6% |