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IMGVR_UViG_3300025471_000009-3300025471-Ga0209508_100072430

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300025471_000009-3300025471-Ga0209508_100072430 ↗
Kingdom:: archaea

Quality

72.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79

PDB

Domain cluster: rep: IMGVR_UViG_3300006674_001581-3300006674-Ga0101770_10009381__D3-78

D2 high residues 203-341

PDB

Domain cluster: rep: LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00064__D84-216

Pfam (6)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13489.13 best	Methyltransf_23	35.7	9.90e-09	89.2%	31.1%
PF13847.13	Methyltransf_31	37.4	3.10e-09	77.7%	36.0%
PF01209.25	Ubie_methyltran	25.0	1.50e-05	61.9%	20.2%
PF08241.19	Methyltransf_11	55.3	1.20e-14	48.9%	51.6%
PF08242.19	Methyltransf_12	32.6	1.60e-07	48.2%	39.8%
PF13649.13	Methyltransf_25	34.9	2.90e-08	40.3%	46.4%

D3 high residues 358-560

PDB

Domain cluster: rep: ATP-dependent_DNA_ligase__YP_009094561__Melbournevirus__1560514__D164-283

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01068.27 best	DNA_ligase_A_M	69.9	3.30e-19	94.6%	89.7%

D4 high residues 575-687

PDB

Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00316__D271-353

D5 high residues 694-760

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h20A04	1.10.1240.50	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.55	34.0	3.17e-01	92.5%	46.1%
3vz3A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.54	44.0	2.99e-01	92.5%	30.4%
5kf6A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.54	43.0	2.96e-01	91.0%	31.4%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.51	43.0	3.93e-01	100.0%	91.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4962587	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.56	48.0	3.44e-01	100.0%	70.9%
3706384	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.56	44.0	4.53e-01	91.0%	98.5%
3274319	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	38.0	2.86e-01	79.1%	64.2%
3066663	267.1.1.3 ↗	a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase	0.50	41.0	2.81e-01	98.5%	57.8%

D6 high residues 1015-1128_1152-1165

PDB

Domain cluster: rep: OL597546.1__UUB23297.1__X__00001__D24-147

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14550.12 best	Peptidase_S78_2	78.1	8.90e-22	88.3%	89.0%

D7 medium residues 87-153

PDB

D8 medium residues 782-797_909-927_941-997

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3jtfA01	3.90.1280.20	Alpha Beta › Alpha-Beta Complex › CBS domain Like ›	0.58	31.0	3.67e-01	92.4%	77.0%
2mkyA00	3.30.70.1530	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041	0.52	25.0	3.03e-01	89.1%	67.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4397259	7.1.1.0 ↗	beta barrels › PDZ domain › PDZ domain › PDZ domain	0.56	33.0	3.23e-01	88.0%	53.4%
138941	282.1.1.1 ↗	a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS	0.53	32.0	3.63e-01	95.7%	84.6%
4043028	7502.1.1.0 ↗	a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS	0.52	38.0	4.02e-01	95.7%	87.5%

D9 medium residues 798-908_928-940

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4meaA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.51	43.0	3.25e-01	94.4%	93.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3817811	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.59	26.0	3.04e-01	91.1%	56.5%