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IMGVR_UViG_3300025480_000181-3300025480-Ga0208688_100029060

Arc-Vir

IMGVR_UViG_3300025480_000181-3300025480-Ga0208688_100029060

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-129
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mlc900 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.76 58.0 6.22e-01 94.4% 92.5%
3v0aB02 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.73 67.0 4.87e-01 100.0% 59.8%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.72 52.0 4.49e-01 75.4% 81.1%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 58.0 6.15e-01 100.0% 99.1%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.71 44.0 5.37e-01 92.1% 100.0%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 57.0 6.09e-01 100.0% 100.0%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.69 62.0 5.03e-01 100.0% 89.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 54.0 5.63e-01 92.9% 91.5%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 55.0 5.86e-01 99.2% 100.0%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.65 50.0 4.98e-01 91.3% 77.7%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.65 49.0 4.43e-01 100.0% 58.0%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 32.0 3.99e-01 87.3% 75.6%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 42.0 3.43e-01 91.3% 35.6%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 37.0 4.07e-01 85.7% 70.6%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 40.0 4.48e-01 96.0% 84.2%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.63 55.0 5.43e-01 97.6% 91.0%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.60 44.0 4.13e-01 85.7% 61.7%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 36.0 3.88e-01 88.9% 68.5%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 37.0 4.31e-01 98.4% 86.8%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 38.0 3.91e-01 92.9% 67.2%
1h6gA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 40.0 4.17e-01 92.1% 73.9%
2f3oA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.59 54.0 3.28e-01 100.0% 53.7%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 38.0 3.84e-01 91.3% 64.8%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.58 41.0 4.27e-01 89.7% 78.2%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.58 49.0 4.16e-01 93.7% 54.9%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 41.0 4.10e-01 95.2% 70.8%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.58 41.0 3.82e-01 73.0% 64.6%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 4.49e-01 100.0% 77.9%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 32.0 3.36e-01 81.0% 59.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 31.0 3.97e-01 86.5% 90.5%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 41.0 4.41e-01 90.5% 87.6%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.57 33.0 3.94e-01 92.9% 84.7%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 40.0 4.34e-01 95.2% 89.3%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 4.57e-01 92.9% 97.8%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 41.0 3.99e-01 91.3% 67.6%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.57 43.0 4.57e-01 98.4% 93.5%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 42.0 4.34e-01 98.4% 84.6%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 46.0 4.20e-01 87.3% 69.0%
4d8mA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.56 42.0 3.53e-01 91.3% 46.3%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.55 45.0 4.21e-01 85.7% 90.7%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 36.0 4.14e-01 94.4% 89.2%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.55 35.0 4.10e-01 96.8% 94.1%
3edvA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 3.65e-01 77.8% 76.0%
1uddA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 32.0 2.72e-01 84.1% 33.0%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 4.17e-01 99.2% 78.1%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.55 40.0 4.46e-01 99.2% 100.0%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.54 39.0 4.15e-01 96.0% 87.0%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 35.0 3.33e-01 93.7% 54.5%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 3.64e-01 76.2% 81.8%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 36.0 3.95e-01 88.1% 84.8%
2xl4A00 1.20.120.1420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain 0.53 39.0 3.73e-01 91.3% 66.0%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.52 43.0 3.55e-01 86.5% 93.9%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.85e-01 91.3% 81.6%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 4.06e-01 86.5% 90.4%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 44.0 3.61e-01 91.3% 80.0%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.51 31.0 3.43e-01 81.0% 75.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032495 2008.1.1.36 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRII-C 0.85 81.0 6.20e-01 100.0% 50.4%
5056747 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.76 56.0 5.77e-01 92.1% 80.0%
3528691 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.74 53.0 5.36e-01 73.8% 88.0%
3547013 621.1.1.8 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 0.72 56.0 5.81e-01 100.0% 88.7%
3530722 4177.1.1.150 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF4745 0.71 49.0 4.85e-01 70.6% 66.7%
1036846 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.71 58.0 6.00e-01 100.0% 91.7%
3447321 109.4.1.1364 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PATROL1, PF27629 0.70 58.0 4.38e-01 88.1% 37.2%
3567180 4177.1.1.61 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C 0.69 63.0 5.08e-01 100.0% 94.6%
4027212 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.69 59.0 5.76e-01 94.4% 84.3%
3414672 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.69 63.0 5.49e-01 100.0% 87.9%
4593595 3835.1.1.0 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein 0.69 50.0 4.13e-01 74.6% 82.6%
3189865 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.68 60.0 4.98e-01 95.2% 95.0%
5077019 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.68 62.0 5.67e-01 100.0% 90.3%
3712097 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.68 34.0 3.98e-01 87.3% 67.8%
3283147 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.67 60.0 4.79e-01 100.0% 62.3%
3625044 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 49.0 5.37e-01 77.0% 94.3%
4828003 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.66 56.0 5.69e-01 100.0% 95.9%
4474640 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.65 55.0 5.58e-01 95.2% 92.0%
3264853 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.65 57.0 5.59e-01 97.6% 89.6%
4337421 5086.1.1.91 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PRM1 0.64 45.0 3.89e-01 71.4% 51.3%
3921484 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.64 44.0 3.49e-01 84.1% 34.5%
3637359 604.10.1.7 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › DUF202 0.64 47.0 5.22e-01 97.6% 98.0%
3287949 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.64 47.0 4.08e-01 77.8% 75.4%
3943140 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.63 57.0 4.95e-01 99.2% 85.8%
3697355 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 45.0 4.20e-01 73.0% 61.9%
3881583 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.62 56.0 5.10e-01 100.0% 88.2%
3635960 601.19.1.18 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.62 48.0 3.69e-01 81.7% 43.2%
3974017 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.61 55.0 4.86e-01 100.0% 84.2%
3590438 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.61 47.0 4.68e-01 99.2% 78.5%
4988228 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.61 55.0 4.76e-01 100.0% 81.5%
3500239 604.1.1.194 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › MENTAL 0.60 43.0 4.75e-01 100.0% 94.0%
2968353 3758.2.1.2 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB 0.59 51.0 3.99e-01 92.1% 65.9%
3516872 4006.1.1.4 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › TraG_N 0.59 43.0 3.73e-01 77.0% 81.5%
5055391 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.58 52.0 4.23e-01 100.0% 87.2%
3420043 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.58 47.0 4.42e-01 96.0% 70.0%
3915047 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 43.0 4.60e-01 100.0% 93.3%
3488291 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 43.0 4.66e-01 94.4% 95.2%
3214189 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 44.0 4.70e-01 97.6% 97.1%
1019364 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.57 43.0 4.58e-01 100.0% 91.9%
4936312 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.57 43.0 4.54e-01 100.0% 90.9%
3924665 604.1.1.136 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_7 0.57 44.0 4.82e-01 95.2% 98.1%
3684768 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 50.0 4.18e-01 98.4% 87.1%
3588615 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 37.0 4.25e-01 89.7% 92.2%
1019365 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.55 42.0 4.39e-01 100.0% 88.7%
3639877 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 42.0 4.51e-01 100.0% 94.5%
3933045 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 45.0 3.93e-01 97.6% 59.3%
3975942 601.4.1.6 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TorS_sensor_domain 0.53 42.0 4.16e-01 81.7% 100.0%
3920960 604.8.1.2 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Mitofilin 0.53 40.0 4.03e-01 92.1% 76.9%
3502658 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.53 47.0 4.54e-01 100.0% 85.5%
4024128 603.1.1.185 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27014 0.53 43.0 3.71e-01 100.0% 55.9%
4958743 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 40.0 4.14e-01 99.2% 89.6%
3673003 3922.1.1.254 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › NET2A_C 0.52 44.0 4.48e-01 100.0% 93.6%
3408380 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 37.0 4.08e-01 99.2% 94.0%
3389599 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.51 38.0 3.92e-01 95.2% 82.5%
3940232 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 39.0 4.26e-01 96.8% 100.0%
4949106 2007.1.3.74 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › MetOD2 0.50 36.0 3.09e-01 75.4% 72.2%
D2 high residues 138-244
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09019.18 best EcoRII-C 28.1 2.90e-06 75.7% 35.8%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gb7D00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.82 75.0 5.35e-01 98.1% 36.6%
3bm3A00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.82 76.0 5.60e-01 100.0% 51.7%
1na6B02 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.78 71.0 5.57e-01 100.0% 50.2%
2c4kA02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 55.0 5.08e-01 86.9% 83.7%
1s3lA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 48.0 4.20e-01 76.6% 55.8%
2qipA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.65 47.0 4.12e-01 74.8% 96.9%
3l0gA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 49.0 4.39e-01 90.7% 58.2%
3s5nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 54.0 3.90e-01 92.5% 42.7%
1f14A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 46.0 3.83e-01 77.6% 89.3%
4pg4A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 50.0 4.37e-01 87.9% 95.6%
3mtjA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 49.0 4.15e-01 86.9% 87.2%
7ec2A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.61 46.0 4.19e-01 82.2% 90.1%
1u1jA01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.61 52.0 3.64e-01 100.0% 77.9%
4bjhB02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.60 43.0 3.91e-01 95.3% 55.6%
5ze7A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 41.0 3.65e-01 87.9% 49.0%
4zemA02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.59 41.0 3.52e-01 96.3% 44.6%
3nb0D01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 51.0 3.76e-01 100.0% 67.5%
3go6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 51.0 3.77e-01 98.1% 86.4%
3lq1A02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.58 42.0 3.62e-01 100.0% 46.8%
8k5lA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 41.0 3.42e-01 99.1% 39.9%
3gbvA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 48.0 4.44e-01 91.6% 83.6%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 51.0 3.74e-01 100.0% 86.2%
4f3yA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 48.0 4.25e-01 94.4% 85.5%
2fepA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 48.0 4.54e-01 94.4% 84.2%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 48.0 3.75e-01 97.2% 89.4%
1t71A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 47.0 3.59e-01 97.2% 82.6%
3q9cA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.56 48.0 3.48e-01 100.0% 76.2%
4om8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 45.0 3.85e-01 93.5% 88.6%
4yacA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 3.58e-01 92.5% 90.8%
4lvuA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 3.54e-01 94.4% 87.3%
3gqwB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 47.0 3.20e-01 100.0% 68.3%
3futA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 3.54e-01 86.9% 79.9%
1vq2A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 41.0 3.57e-01 84.1% 74.0%
2zsjA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 40.0 4.13e-01 96.3% 87.6%
1e5xA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 40.0 4.10e-01 97.2% 86.3%
4rk6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 44.0 4.24e-01 94.4% 87.3%
3v1tC01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 44.0 3.79e-01 94.4% 74.7%
2yutA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 3.70e-01 98.1% 96.0%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.51 45.0 3.89e-01 100.0% 86.9%
2p97A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 44.0 3.66e-01 99.1% 52.2%
3fedA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.51 40.0 3.26e-01 87.9% 94.6%
1r6hA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 41.0 3.61e-01 92.5% 67.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5031775 2008.1.1.36 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRII-C 0.86 80.0 7.85e-01 100.0% 93.0%
5032495 2008.1.1.36 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRII-C 0.85 79.0 5.76e-01 98.1% 40.8%
301582 2008.1.1.36 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRII-C 0.83 76.0 5.41e-01 98.1% 36.6%
4259121 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 73.0 7.30e-01 98.1% 96.3%
136487 2008.1.1.36 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRII-C 0.78 71.0 5.56e-01 100.0% 50.0%
5014251 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 57.0 3.92e-01 86.9% 66.9%
4226480 7573.1.1.3 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyl_synth 0.69 56.0 4.87e-01 87.9% 74.5%
4956909 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 59.0 4.33e-01 96.3% 87.5%
5080551 2002.1.1.70 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glu_synthase 0.68 51.0 3.49e-01 80.4% 64.1%
4992503 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 59.0 4.10e-01 98.1% 57.3%
4944840 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 58.0 4.50e-01 100.0% 90.8%
4995351 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.64 45.0 4.55e-01 96.3% 71.8%
3739643 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 57.0 4.64e-01 97.2% 84.6%
5053367 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 46.0 4.32e-01 92.5% 61.5%
4462317 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.62 55.0 4.18e-01 98.1% 73.7%
4972567 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 55.0 3.85e-01 99.1% 79.7%
3697788 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.61 45.0 4.00e-01 89.7% 53.5%
3601312 7516.1.1.0 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.60 54.0 3.69e-01 100.0% 81.5%
3258776 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.60 51.0 4.26e-01 94.4% 90.5%
4183675 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.60 48.0 4.59e-01 86.9% 96.8%
3351970 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.59 52.0 4.09e-01 100.0% 70.4%
5011357 7574.1.1.0 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.59 48.0 4.12e-01 89.7% 78.3%
4995138 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.59 51.0 4.03e-01 99.1% 88.7%
4092215 7512.1.1.10 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.58 49.0 4.19e-01 94.4% 94.4%
4946690 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.58 49.0 4.09e-01 90.7% 65.0%
4979672 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.58 44.0 4.36e-01 81.3% 93.0%
None 0.58 50.0 3.73e-01 98.1% 74.5%
4052464 7512.1.1.10 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 0.57 50.0 4.15e-01 98.1% 96.9%
4072774 2003.1.1.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DapB_N 0.57 48.0 4.22e-01 94.4% 81.2%
3707031 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.56 47.0 4.05e-01 94.4% 90.9%
4158986 7548.1.1.1 a/b three-layered sandwiches › Methylesterase CheB, C-terminal domain › Methylesterase CheB, C-terminal domain › Methylesterase CheB, C-terminal domain › CheB_methylest 0.55 46.0 3.86e-01 94.4% 92.5%
4257833 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 46.0 4.28e-01 91.6% 99.3%
5032437 2007.1.9.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC 0.55 46.0 4.01e-01 94.4% 71.8%
3266672 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.54 44.0 3.35e-01 90.7% 83.9%
3919622 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 47.0 3.98e-01 100.0% 94.6%
5040919 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 37.0 3.44e-01 78.5% 55.7%
4984661 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.52 45.0 4.10e-01 93.5% 97.1%