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IMGVR_UViG_3300025584_000027-3300025584-Ga0209774_10007604
Arc-VirIMGVR_UViG_3300025584_000027-3300025584-Ga0209774_10007604
Identity
- Kingdom:
- archaea
Quality
89.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-70
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 40.0 | 3.33e-01 | 85.0% | 33.9% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.55 | 47.0 | 3.20e-01 | 100.0% | 84.5% |
| 2p8jA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 35.0 | 2.51e-01 | 71.7% | 89.8% |
| 1zoyA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.52 | 35.0 | 3.44e-01 | 75.0% | 64.6% |
| 1lwdA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.51 | 38.0 | 2.40e-01 | 86.7% | 92.0% |
| 3bvxA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 42.0 | 3.25e-01 | 95.0% | 67.3% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 36.0 | 2.52e-01 | 80.0% | 85.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590878 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.62 | 43.0 | 2.96e-01 | 71.7% | 63.3% |
| 3402269 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.61 | 40.0 | 3.32e-01 | 88.3% | 36.4% |
| 3940319 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 45.0 | 2.82e-01 | 85.0% | 17.4% |
| 3734626 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.57 | 40.0 | 2.78e-01 | 75.0% | 55.9% |
| 3328712 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.57 | 40.0 | 2.73e-01 | 75.0% | 28.3% |
| 5052927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 3.11e-01 | 76.7% | 54.8% |
| 3223309 | 11.1.1.934 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C | 0.55 | 39.0 | 2.55e-01 | 75.0% | 56.4% |
| 4983372 | 304.48.1.20 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 | 0.55 | 47.0 | 3.14e-01 | 100.0% | 85.2% |
| 3604192 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 37.0 | 2.94e-01 | 71.7% | 43.6% |
| 4968312 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.53 | 41.0 | 2.83e-01 | 85.0% | 66.8% |
| 1141836 | 213.1.1.12 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › AstA | 0.53 | 44.0 | 2.97e-01 | 98.3% | 63.4% |
| 3638181 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 41.0 | 2.69e-01 | 88.3% | 38.2% |
| 4943803 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.51 | 36.0 | 2.45e-01 | 78.3% | 30.4% |
| 4351239 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.51 | 36.0 | 2.96e-01 | 78.3% | 74.6% |
| 3387077 | 327.13.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C | 0.51 | 39.0 | 3.04e-01 | 85.0% | 39.3% |
D2
medium
residues 71-138
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25188.1 best | Tad6 | 39.0 | 1.10e-09 | 98.5% | 55.2% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 41.0 | 3.42e-01 | 79.4% | 61.5% |
| 4h4rA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 3.37e-01 | 94.1% | 90.3% |
| 2kanA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 38.0 | 3.81e-01 | 77.9% | 98.6% |
| 4eadA03 | 3.90.1170.30 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Pyrimidine nucleoside phosphorylase-like, C-terminal domain | 0.52 | 38.0 | 3.38e-01 | 77.9% | 85.6% |
| 2oikA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.51 | 42.0 | 3.45e-01 | 95.6% | 92.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5025492 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.57 | 39.0 | 2.76e-01 | 72.1% | 87.6% |
| 4447158 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 46.0 | 3.48e-01 | 100.0% | 92.8% |
| 3727822 | 7527.1.1.2 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 | 0.53 | 42.0 | 2.75e-01 | 97.1% | 35.2% |
| 4994739 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.53 | 45.0 | 3.38e-01 | 100.0% | 93.2% |
| 4936756 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 43.0 | 3.15e-01 | 94.1% | 90.7% |