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IMGVR_UViG_3300025584_000222-3300025584-Ga0209774_100287510
Arc-VirIMGVR_UViG_3300025584_000222-3300025584-Ga0209774_100287510
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-278
Domain cluster:
rep: MW584157.1__QSM02054.1__PROPHIGD68-1_78__00076__D7-250
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04055.28 best | Radical_SAM | 44.0 | 3.90e-11 | 52.1% | 68.1% |
| PF13353.12 | Fer4_12 | 26.2 | 1.20e-05 | 44.0% | 62.8% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m7tA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 65.0 | 6.73e-01 | 88.0% | 94.7% |
| 4k36B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.73 | 62.0 | 5.49e-01 | 88.4% | 93.7% |
| 5v1qB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 57.0 | 5.48e-01 | 80.7% | 100.0% |
| 1tv8B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.70 | 59.0 | 5.47e-01 | 88.8% | 98.5% |
| 1r30A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 50.0 | 4.74e-01 | 82.6% | 85.3% |
| 7pd2B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 50.0 | 4.49e-01 | 82.2% | 78.2% |
| 4ntcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 29.0 | 4.04e-01 | 83.8% | 91.1% |
| 2ex2A02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.60 | 24.0 | 3.67e-01 | 72.2% | 87.4% |
| 1kwgA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 48.0 | 4.13e-01 | 81.9% | 97.2% |
| 4ov4A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 46.0 | 4.56e-01 | 81.1% | 95.3% |
| 2r6fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 28.0 | 3.26e-01 | 96.5% | 59.8% |
| 2a5hA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 49.0 | 4.73e-01 | 86.5% | 79.0% |
| 1k70A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 47.0 | 4.48e-01 | 87.6% | 92.2% |
| 3i45A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 34.0 | 4.03e-01 | 88.4% | 87.2% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.54 | 39.0 | 4.21e-01 | 74.1% | 87.7% |
| 2j62A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 45.0 | 4.21e-01 | 87.6% | 98.7% |
| 3mu7A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 42.0 | 4.21e-01 | 82.2% | 98.9% |
| 1zfjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 44.0 | 3.60e-01 | 86.5% | 87.4% |
| 1jvnA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 4.08e-01 | 82.2% | 96.3% |
| 5mifA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 38.0 | 3.65e-01 | 72.6% | 78.5% |
| 4xkyA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 4.16e-01 | 85.7% | 80.5% |
| 2bfdB02 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 24.0 | 3.35e-01 | 94.2% | 85.6% |
| 1ojxE00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 42.0 | 4.28e-01 | 82.6% | 94.0% |
| 2agkA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 41.0 | 4.28e-01 | 81.5% | 97.9% |
| 3nl6B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 41.0 | 4.40e-01 | 82.2% | 96.4% |
| 1s2uB00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.51 | 41.0 | 3.97e-01 | 83.8% | 96.2% |
| 1nfgA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 40.0 | 3.63e-01 | 82.6% | 85.4% |
| 2xtkA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 40.0 | 3.79e-01 | 88.4% | 69.4% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3388038 | 2002.1.1.232 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 | 0.82 | 73.0 | 6.97e-01 | 91.5% | 86.0% |
| 3957000 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.77 | 58.0 | 4.79e-01 | 76.4% | 84.4% |
| 5016066 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 66.0 | 6.20e-01 | 88.0% | 93.1% |
| 1106783 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.77 | 65.0 | 6.73e-01 | 88.0% | 94.7% |
| 5059146 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 57.0 | 4.87e-01 | 75.7% | 98.7% |
| 5047651 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.76 | 57.0 | 4.84e-01 | 76.1% | 95.4% |
| 4958428 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 62.0 | 6.34e-01 | 90.0% | 88.8% |
| 5065427 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 63.0 | 5.76e-01 | 88.4% | 92.1% |
| 998620 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.74 | 63.0 | 5.44e-01 | 88.4% | 90.3% |
| 5051987 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 64.0 | 5.83e-01 | 89.2% | 99.1% |
| 4958130 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.73 | 63.0 | 5.64e-01 | 88.8% | 94.8% |
| 4310227 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.73 | 61.0 | 5.57e-01 | 86.9% | 97.6% |
| 4975884 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 60.0 | 5.62e-01 | 86.1% | 100.0% |
| 3203756 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.72 | 61.0 | 5.33e-01 | 88.8% | 94.5% |
| 2323965 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.72 | 61.0 | 5.53e-01 | 88.0% | 99.1% |
| 4934106 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.72 | 59.0 | 5.41e-01 | 85.3% | 95.5% |
| 4974059 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 61.0 | 5.60e-01 | 88.4% | 98.8% |
| 4260578 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.71 | 59.0 | 5.60e-01 | 84.6% | 100.0% |
| 5001394 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 61.0 | 5.44e-01 | 88.8% | 92.6% |
| 4986886 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 61.0 | 5.42e-01 | 88.4% | 93.1% |
| 4356341 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.71 | 61.0 | 5.56e-01 | 88.8% | 97.6% |
| 3952798 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.71 | 61.0 | 5.53e-01 | 89.2% | 95.3% |
| 5022715 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.71 | 60.0 | 5.86e-01 | 87.3% | 99.3% |
| 4556622 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.71 | 60.0 | 5.58e-01 | 87.6% | 97.1% |
| 4406456 | 2002.1.1.121 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C | 0.71 | 58.0 | 5.41e-01 | 84.6% | 95.9% |
| 4033370 | 2002.1.1.217 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,YfkB | 0.70 | 60.0 | 5.26e-01 | 88.8% | 90.8% |
| 4999002 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 54.0 | 4.86e-01 | 82.6% | 78.7% |
| 4931585 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.67 | 53.0 | 4.76e-01 | 82.6% | 76.6% |
| 5023655 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.66 | 51.0 | 4.98e-01 | 78.0% | 95.6% |
| 5015916 | 2002.1.1.459 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF26257 | 0.66 | 53.0 | 4.75e-01 | 83.8% | 92.7% |
| 4956946 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.65 | 53.0 | 4.71e-01 | 83.8% | 91.1% |
| 3388047 | 2002.1.1.122 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS | 0.64 | 51.0 | 4.50e-01 | 82.2% | 77.0% |
| 4935176 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 52.0 | 4.65e-01 | 83.8% | 88.4% |
| 5054604 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 54.0 | 5.15e-01 | 88.8% | 97.7% |
| 5045354 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 51.0 | 4.82e-01 | 83.8% | 92.3% |
| 4990319 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 51.0 | 5.23e-01 | 82.2% | 95.9% |
| 5015859 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 50.0 | 4.66e-01 | 82.2% | 84.4% |
| 5077489 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.62 | 48.0 | 4.91e-01 | 88.4% | 81.6% |
| 4959771 | 2002.1.1.450 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › LAM_C | 0.61 | 50.0 | 4.14e-01 | 83.0% | 71.1% |
| 4930546 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.61 | 51.0 | 4.74e-01 | 87.3% | 92.3% |
| 3512243 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 43.0 | 4.83e-01 | 88.8% | 91.0% |
| 4971612 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.59 | 46.0 | 4.54e-01 | 90.3% | 74.3% |
| 4995727 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 47.0 | 4.83e-01 | 82.6% | 99.6% |
| 4010594 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 47.0 | 4.82e-01 | 89.2% | 86.9% |
| 4987728 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 48.0 | 4.85e-01 | 90.0% | 87.0% |
| 4949147 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 42.0 | 4.25e-01 | 73.7% | 91.5% |
| 5022618 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 44.0 | 4.35e-01 | 77.2% | 94.4% |
| 4944164 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.57 | 44.0 | 4.18e-01 | 90.3% | 68.1% |
| 3929618 | 2002.1.1.104 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C | 0.57 | 45.0 | 4.27e-01 | 81.9% | 91.0% |
| 4679851 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 47.0 | 4.73e-01 | 89.6% | 85.8% |
| 5011246 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.56 | 48.0 | 4.50e-01 | 91.5% | 100.0% |
| 5025778 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 47.0 | 4.35e-01 | 89.6% | 71.1% |
| 4933365 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 48.0 | 4.38e-01 | 89.6% | 76.1% |
| 3976773 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.56 | 47.0 | 4.43e-01 | 87.6% | 83.5% |
| 4942121 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 48.0 | 4.58e-01 | 89.2% | 79.9% |
| 3604553 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.56 | 47.0 | 4.37e-01 | 87.6% | 82.5% |
| 4992726 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 47.0 | 4.70e-01 | 87.3% | 88.3% |
| 3589076 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.55 | 46.0 | 4.37e-01 | 87.6% | 84.8% |
| None | — | 0.55 | 39.0 | 3.56e-01 | 70.3% | 71.6% | |
| 3698117 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.55 | 39.0 | 3.55e-01 | 70.3% | 71.5% |
| 5077296 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 46.0 | 4.63e-01 | 89.2% | 86.5% |
| 5048704 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 47.0 | 4.68e-01 | 88.0% | 90.9% |
| 4272265 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.55 | 33.0 | 3.64e-01 | 89.2% | 70.7% |
| 4988865 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 45.0 | 4.44e-01 | 87.3% | 81.1% |
| 5026936 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.54 | 43.0 | 3.96e-01 | 83.4% | 97.3% |
| 3979036 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 46.0 | 4.54e-01 | 88.8% | 89.3% |
| 3326510 | 2002.1.1.11 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PK | 0.53 | 43.0 | 4.17e-01 | 83.8% | 90.7% |
| 5074883 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 45.0 | 4.56e-01 | 88.4% | 88.5% |
| 5011071 | 2005.1.1.32 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF5751 | 0.53 | 26.0 | 3.54e-01 | 83.4% | 90.8% |
| 3958508 | 2002.1.1.274 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1, Amidohydro_3 | 0.52 | 43.0 | 3.54e-01 | 87.6% | 84.3% |
| None | — | 0.51 | 37.0 | 3.88e-01 | 88.0% | 81.3% | |
| None | — | 0.50 | 37.0 | 3.87e-01 | 88.4% | 82.8% |