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IMGVR_UViG_3300025584_000284-3300025584-Ga0209774_100031714

Arc-Vir

IMGVR_UViG_3300025584_000284-3300025584-Ga0209774_100031714

Quality

93.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-75
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.64 56.0 4.63e-01 100.0% 79.9%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 51.0 5.03e-01 97.3% 97.6%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.60 28.0 3.40e-01 70.7% 65.2%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 42.0 3.28e-01 76.0% 65.4%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 50.0 4.84e-01 100.0% 100.0%
2p18A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 48.0 3.31e-01 93.3% 53.4%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 50.0 3.40e-01 100.0% 80.2%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 41.0 3.07e-01 100.0% 31.6%
3rlfF02 3.10.650.10 Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like 0.54 38.0 3.71e-01 88.0% 68.3%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 46.0 3.91e-01 100.0% 96.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.35e-01 92.0% 47.2%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 36.0 3.50e-01 70.7% 66.3%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 46.0 4.25e-01 98.7% 94.7%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 43.0 3.67e-01 92.0% 57.9%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.51 45.0 3.95e-01 96.0% 89.1%
2bolB02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.54e-01 90.7% 71.9%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 34.0 2.28e-01 94.7% 16.5%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 35.0 3.17e-01 74.7% 80.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3819668 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.77 38.0 4.78e-01 86.7% 79.5%
3482645 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.75 37.0 5.01e-01 86.7% 100.0%
4964214 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.75 37.0 4.30e-01 88.0% 65.5%
5031337 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.73 36.0 4.74e-01 86.7% 89.7%
4966194 375.1.1.130 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.65 36.0 4.45e-01 89.3% 91.1%
2462240 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.59 50.0 3.51e-01 100.0% 31.9%
3210934 77.3.1.7 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 0.58 43.0 3.89e-01 80.0% 59.0%
3914736 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 32.0 3.47e-01 98.7% 63.1%
4034422 3425.2.1.3 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.57 50.0 3.54e-01 100.0% 45.7%
3739664 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.57 36.0 3.78e-01 89.3% 70.0%
2712777 7515.1.1.5 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.56 38.0 2.30e-01 97.3% 11.0%
3781848 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.56 36.0 3.78e-01 88.0% 71.4%
5004274 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 37.0 3.80e-01 100.0% 69.3%
5033645 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.56 39.0 3.86e-01 94.7% 68.8%
5010017 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.55 40.0 2.95e-01 78.7% 69.5%
4944226 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 44.0 4.44e-01 97.3% 88.0%
3228567 2484.1.1.162 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.54 32.0 2.71e-01 100.0% 31.4%
3627280 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.53 40.0 4.01e-01 86.7% 81.3%
3474457 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 36.0 3.30e-01 100.0% 54.7%
3171576 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.52 42.0 4.15e-01 89.3% 86.3%
4969758 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.52 41.0 3.88e-01 98.7% 71.1%
4239781 3006.1.1.6 a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C 0.52 39.0 4.02e-01 89.3% 87.1%
5054850 3425.2.1.0 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain 0.51 45.0 3.14e-01 100.0% 53.1%
3871299 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.51 43.0 3.15e-01 93.3% 33.3%
3771735 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 42.0 3.15e-01 94.7% 48.1%
3812754 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 45.0 3.12e-01 96.0% 33.0%
3899940 331.4.1.9 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.50 38.0 3.75e-01 89.3% 78.8%
3175626 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.50 40.0 4.06e-01 89.3% 86.7%
D2 medium residues 76-147
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 48.0 3.91e-01 94.4% 43.8%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.64 40.0 3.65e-01 76.4% 46.5%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.61 43.0 3.34e-01 73.6% 41.8%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 33.0 3.67e-01 70.8% 68.4%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 34.0 3.06e-01 86.1% 38.8%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.58 35.0 3.96e-01 70.8% 81.1%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 44.0 4.28e-01 100.0% 73.8%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 43.0 3.32e-01 94.4% 33.3%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 36.0 2.92e-01 77.8% 31.9%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.57 36.0 3.38e-01 81.9% 51.7%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 37.0 3.49e-01 84.7% 52.7%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 36.0 3.09e-01 75.0% 39.5%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 43.0 4.42e-01 100.0% 92.4%
2m1hA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.12e-01 97.2% 93.6%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 36.0 3.45e-01 83.3% 56.6%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 47.0 3.54e-01 100.0% 77.6%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.57e-01 90.3% 84.6%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 42.0 3.57e-01 88.9% 74.2%
5ko9A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.52 43.0 3.11e-01 98.6% 78.3%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.52 44.0 3.57e-01 97.2% 73.8%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.44e-01 94.4% 79.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.52 34.0 3.27e-01 81.9% 57.1%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.52 36.0 2.81e-01 81.9% 33.1%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 44.0 3.21e-01 100.0% 91.4%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.52 37.0 3.34e-01 95.8% 53.8%
1u2eA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 35.0 2.37e-01 70.8% 25.5%
6pnuB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 37.0 2.62e-01 81.9% 80.1%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 40.0 3.40e-01 87.5% 69.9%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.51 41.0 3.47e-01 100.0% 93.2%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.79e-01 95.8% 85.2%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 36.0 3.17e-01 76.4% 53.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3179717 9.14.1.0 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.61 42.0 3.61e-01 73.6% 50.0%
3613921 330.1.1.22 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.60 39.0 3.28e-01 87.5% 38.4%
4963695 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 42.0 3.66e-01 83.3% 49.1%
3965912 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 37.0 3.40e-01 84.7% 48.4%
2832186 59.1.3.2 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_polI_A34 0.58 42.0 3.42e-01 80.6% 43.0%
4978713 7579.1.1.3 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.58 36.0 2.48e-01 75.0% 16.4%
5061264 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.58 37.0 3.62e-01 76.4% 58.7%
4142339 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.57 48.0 3.89e-01 94.4% 76.4%
3492201 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.57 43.0 4.27e-01 100.0% 81.3%
4988343 223.1.1.20 a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3365 0.56 41.0 3.20e-01 80.6% 38.3%
3235748 209.1.1.14 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.56 38.0 2.96e-01 72.2% 97.1%
4962837 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.56 40.0 3.47e-01 84.7% 49.1%
4964662 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 40.0 3.42e-01 84.7% 46.7%
3271559 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 42.0 3.51e-01 86.1% 71.1%
4989448 223.1.1.20 a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3365 0.55 40.0 3.37e-01 80.6% 50.4%
3616990 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 3.65e-01 86.1% 54.5%
5019574 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 39.0 3.38e-01 84.7% 47.8%
3215398 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 43.0 3.40e-01 87.5% 46.7%
4980708 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 3.39e-01 84.7% 45.7%
3711026 7.1.1.16 beta barrels › PDZ domain › PDZ domain › PDZ domain › DUF7762 0.53 37.0 3.26e-01 73.6% 100.0%
4959266 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 41.0 2.82e-01 84.7% 24.2%
3593374 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 41.0 3.59e-01 86.1% 54.8%
3446217 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 47.0 3.14e-01 100.0% 38.9%
3805678 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.53 46.0 3.96e-01 97.2% 91.3%
3600840 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 37.0 3.44e-01 86.1% 55.0%
4651594 230.3.1.0 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain 0.53 36.0 3.26e-01 72.2% 95.2%
3517869 213.1.1.22 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N 0.53 45.0 3.41e-01 100.0% 97.9%
3489808 59.1.1.9 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF 0.52 38.0 3.88e-01 77.8% 87.1%
3897238 12.3.1.42 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.52 42.0 2.95e-01 93.1% 29.4%
4959068 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 40.0 2.67e-01 84.7% 20.3%
3866573 12.3.1.42 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.52 41.0 2.83e-01 93.1% 28.1%
5041222 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 42.0 3.56e-01 93.1% 53.8%
3528856 3444.2.1.5 alpha arrays › DP domain › XPC-binding domain and DDI helical domain › XPC-binding domain › LMF1_C 0.51 35.0 3.00e-01 72.2% 86.4%
3963080 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 36.0 3.18e-01 76.4% 71.3%
4342673 212.1.1.18 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C 0.51 36.0 3.13e-01 73.6% 68.3%
3921603 101.1.8.12 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.50 42.0 3.19e-01 95.8% 51.6%
4951932 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.50 42.0 2.80e-01 93.1% 23.7%
3824181 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.50 37.0 4.02e-01 80.6% 100.0%