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IMGVR_UViG_3300025584_000371-3300025584-Ga0209774_10005832
Arc-VirIMGVR_UViG_3300025584_000371-3300025584-Ga0209774_10005832
Identity
- Kingdom:
- archaea
Quality
82.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-114
Domain cluster:
rep: NC_007581.1__YP_398504.1__CST074__00074__D2-70
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00462.31 best | Glutaredoxin | 45.6 | 9.20e-12 | 77.8% | 98.3% |
D2
high
residues 139-254_297-371
Domain cluster:
rep: IMGVR_UViG_3300037805_000607-3300037805-Ga0427877_001158_17767_18546__D1-97_168-220
D3
medium
residues 255-296_372-412
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hn7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 30.0 | 3.25e-01 | 97.6% | 50.0% |
| 2istA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.59 | 29.0 | 3.18e-01 | 90.4% | 55.6% |
| 1oeyA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 29.0 | 2.95e-01 | 95.2% | 52.4% |
| 1ckeA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 47.0 | 3.52e-01 | 100.0% | 44.3% |
| 2zxiA03 | 1.10.10.1800 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA | 0.53 | 27.0 | 2.60e-01 | 91.6% | 39.2% |
| 3rmqA02 | 6.10.140.1650 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 33.0 | 3.71e-01 | 85.5% | 96.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954326 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.63 | 29.0 | 3.24e-01 | 85.5% | 54.3% |
| 3949525 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.63 | 29.0 | 3.47e-01 | 85.5% | 63.3% |
| 3291005 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.63 | 30.0 | 3.24e-01 | 85.5% | 54.3% |
| 3838040 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.61 | 29.0 | 3.30e-01 | 90.4% | 60.0% |
| 4998718 | 2004.1.1.197 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_3 | 0.61 | 55.0 | 3.58e-01 | 100.0% | 38.9% |
| 4598810 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.61 | 29.0 | 3.55e-01 | 90.4% | 70.9% |
| 3838530 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.59 | 28.0 | 3.27e-01 | 90.4% | 63.3% |
| 3587422 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.57 | 28.0 | 3.42e-01 | 85.5% | 70.9% |
| 3284349 | 101.1.2.735 ↗ | alpha arrays › HTH › HTH › winged helix domain › PspC | 0.56 | 43.0 | 4.33e-01 | 86.7% | 80.0% |
| 3177330 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.53 | 29.0 | 2.80e-01 | 94.0% | 47.4% |
| 3413024 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.53 | 44.0 | 3.24e-01 | 97.6% | 89.2% |