←Back to structures
IMGVR_UViG_3300025584_000512-3300025584-Ga0209774_10029735
Arc-VirIMGVR_UViG_3300025584_000512-3300025584-Ga0209774_10029735
Identity
- Kingdom:
- archaea
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 135-262
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6iw2A01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.56 | 36.0 | 3.58e-01 | 96.1% | 62.4% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 40.0 | 3.70e-01 | 99.2% | 57.6% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 31.0 | 3.34e-01 | 92.2% | 64.0% |
| 3nqzA01 | 3.10.450.490 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 28.0 | 3.19e-01 | 87.5% | 68.1% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.51 | 35.0 | 3.02e-01 | 70.3% | 80.4% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 35.0 | 3.44e-01 | 100.0% | 63.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967145 | 223.1.1.54 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE4 | 0.57 | 40.0 | 3.25e-01 | 73.4% | 97.3% |
| 3960415 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 31.0 | 3.20e-01 | 87.5% | 63.3% |
| 3244242 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.51 | 29.0 | 2.14e-01 | 92.2% | 21.2% |
D2
medium
residues 84-133
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yhqH00 | 3.90.1170.10 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 | 0.64 | 43.0 | 3.09e-01 | 72.0% | 60.0% |
| 2jg0A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.62 | 47.0 | 2.74e-01 | 84.0% | 27.0% |
| 1sdoA00 | 3.40.91.20 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.62 | 44.0 | 2.94e-01 | 74.0% | 46.9% |
| 2ig8A00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.62 | 46.0 | 3.38e-01 | 82.0% | 76.1% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 43.0 | 2.58e-01 | 76.0% | 16.5% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.60 | 40.0 | 4.12e-01 | 70.0% | 81.2% |
| 3uwcA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 39.0 | 2.92e-01 | 70.0% | 82.0% |
| 3czbA02 | 2.40.240.50 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases | 0.57 | 41.0 | 3.04e-01 | 82.0% | 63.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3646933 | 5.1.4.336 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IP5PC_F | 0.64 | 49.0 | 3.23e-01 | 86.0% | 21.3% |
| 3743467 | 5.1.4.332 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 | 0.64 | 50.0 | 3.10e-01 | 90.0% | 63.2% |
| 3785807 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.60 | 46.0 | 3.51e-01 | 92.0% | 35.3% |
| 3380383 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.53 | 36.0 | 2.57e-01 | 72.0% | 35.1% |
| 3618564 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 38.0 | 3.04e-01 | 80.0% | 53.0% |
| 3807674 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.52 | 41.0 | 2.76e-01 | 92.0% | 88.5% |
| 4928028 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 35.0 | 2.92e-01 | 72.0% | 83.9% |
| 1153496 | 239.1.1.4 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › MltA | 0.51 | 37.0 | 2.78e-01 | 84.0% | 73.2% |
| 3929065 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.51 | 40.0 | 3.97e-01 | 98.0% | 94.5% |
| 5051182 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 37.0 | 2.33e-01 | 82.0% | 54.8% |
| 4983428 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.51 | 37.0 | 2.42e-01 | 76.0% | 22.1% |
D3
medium
residues 332-419
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.62 | 38.0 | 4.27e-01 | 96.6% | 80.9% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.58 | 25.0 | 3.10e-01 | 72.7% | 61.8% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 3.55e-01 | 72.7% | 70.5% |
| 3gr5A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.57 | 37.0 | 4.07e-01 | 98.9% | 85.3% |
| 1ce7A02 | 4.10.470.10 | Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 | 0.57 | 29.0 | 3.10e-01 | 100.0% | 51.9% |
| 3n89A02 | 3.30.310.210 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.56 | 48.0 | 4.27e-01 | 100.0% | 99.3% |
| 4d7sA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 43.0 | 3.85e-01 | 86.4% | 96.2% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.55 | 35.0 | 3.84e-01 | 98.9% | 81.4% |
| 2pqqA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 47.0 | 4.02e-01 | 96.6% | 90.5% |
| 2v4jB03 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 4.00e-01 | 79.5% | 95.4% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 4.05e-01 | 80.7% | 95.3% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.53 | 39.0 | 4.09e-01 | 89.8% | 90.9% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 44.0 | 2.99e-01 | 92.0% | 84.0% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 30.0 | 3.19e-01 | 87.5% | 65.3% |
| 6l3tA01 | 1.20.1440.80 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain | 0.52 | 44.0 | 3.45e-01 | 96.6% | 93.0% |
| 3h7hB00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.52 | 40.0 | 4.00e-01 | 89.8% | 81.1% |
| 7b1xA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 42.0 | 2.94e-01 | 88.6% | 99.7% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 38.0 | 3.77e-01 | 80.7% | 73.7% |
| 3dv8A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 42.0 | 3.71e-01 | 94.3% | 97.8% |
| 6c1qB02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 38.0 | 2.75e-01 | 80.7% | 55.9% |
| 1r89A03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.51 | 38.0 | 3.38e-01 | 81.8% | 68.7% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.33e-01 | 71.6% | 68.6% |
| 3ossD00 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.50 | 37.0 | 3.11e-01 | 78.4% | 73.9% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 36.0 | 3.51e-01 | 76.1% | 76.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965147 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.59 | 41.0 | 3.04e-01 | 71.6% | 81.3% |
| 4033119 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.59 | 46.0 | 4.41e-01 | 84.1% | 80.0% |
| 1389176 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.57 | 37.0 | 4.01e-01 | 98.9% | 81.7% |
| 3739985 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.56 | 39.0 | 3.34e-01 | 73.9% | 48.4% |
| 4329039 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.56 | 40.0 | 4.37e-01 | 89.8% | 95.7% |
| 4998663 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.88e-01 | 85.2% | 68.5% |
| 3262137 | 101.1.2.167 ↗ | alpha arrays › HTH › HTH › winged helix domain › XRN1_D2_D3 | 0.55 | 39.0 | 3.30e-01 | 73.9% | 56.0% |
| 3596989 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 42.0 | 4.38e-01 | 89.8% | 90.0% |
| 3586911 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 39.0 | 3.90e-01 | 76.1% | 71.6% |
| 3220364 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.54 | 38.0 | 2.97e-01 | 100.0% | 32.0% |
| 3946654 | 517.2.1.0 ↗ | beta barrels › CBF-like › TraF › TraF | 0.54 | 35.0 | 2.47e-01 | 100.0% | 20.7% |
| 3573006 | 327.11.2.54 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_5 | 0.54 | 39.0 | 4.21e-01 | 78.4% | 93.3% |
| 5036199 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 38.0 | 4.04e-01 | 73.9% | 96.0% |
| 3707484 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 40.0 | 3.88e-01 | 87.5% | 72.7% |
| 4355727 | 304.9.1.71 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD | 0.53 | 45.0 | 3.91e-01 | 95.5% | 75.7% |
| 5075945 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 35.0 | 3.87e-01 | 96.6% | 85.7% |
| 5078666 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.52 | 41.0 | 2.86e-01 | 88.6% | 26.8% |
| 3206066 | 327.19.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain | 0.52 | 36.0 | 3.37e-01 | 71.6% | 62.7% |
| 4961487 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 3.35e-01 | 73.9% | 64.3% |
| 5043001 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.51 | 30.0 | 2.88e-01 | 96.6% | 48.6% |
| 5047839 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 39.0 | 4.07e-01 | 90.9% | 93.8% |
| 5035757 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.51 | 42.0 | 4.07e-01 | 96.6% | 81.9% |
| 4529236 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.50 | 40.0 | 2.93e-01 | 88.6% | 59.3% |
| 4404596 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 35.0 | 3.10e-01 | 71.6% | 53.8% |
| 3871099 | 3937.1.1.1 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin | 0.50 | 41.0 | 2.99e-01 | 90.9% | 80.0% |
| 4791706 | 304.126.1.4 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N | 0.50 | 36.0 | 3.85e-01 | 85.2% | 93.2% |
D4
medium
residues 420-525