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IMGVR_UViG_3300025587_000202-3300025587-Ga0208938_10003783

Arc-Vir

IMGVR_UViG_3300025587_000202-3300025587-Ga0208938_10003783

Identity

Kingdom:
archaea

Quality

90.9 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-202
PDB
Domain cluster: rep: NC_048679.1__YP_009835506.1__HWB34_gp31__00031__D132-209
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.76 65.0 5.98e-01 100.0% 73.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 52.0 5.25e-01 100.0% 80.3%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 58.0 4.74e-01 100.0% 61.1%
2nv4A00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.66 57.0 4.71e-01 100.0% 85.6%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 57.0 5.28e-01 100.0% 83.7%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 46.0 4.93e-01 81.2% 87.7%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 54.0 4.94e-01 92.8% 76.1%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 54.0 4.71e-01 92.8% 71.8%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 52.0 4.56e-01 95.7% 68.8%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 54.0 5.01e-01 100.0% 80.2%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 54.0 4.87e-01 100.0% 84.5%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 51.0 4.68e-01 100.0% 83.5%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 47.0 4.16e-01 100.0% 57.5%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 47.0 4.49e-01 100.0% 73.6%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 50.0 4.72e-01 100.0% 93.1%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 47.0 4.22e-01 92.8% 73.8%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.58 48.0 4.55e-01 100.0% 77.4%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 4.44e-01 100.0% 82.6%
4n6rB00 2.60.40.3960 Mainly Beta › Sandwich › Immunoglobulin-like › Velvet domain 0.57 47.0 3.53e-01 98.6% 75.8%
4ohvA03 2.40.30.330 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain 0.57 46.0 4.23e-01 89.9% 86.5%
3su0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 38.0 3.38e-01 97.1% 44.6%
2npiA03 2.40.30.330 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain 0.56 44.0 3.91e-01 88.4% 87.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.94e-01 76.8% 75.8%
1y56B02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.55 40.0 3.18e-01 78.3% 41.7%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 41.0 3.85e-01 79.7% 73.3%
1ly2A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 40.0 4.23e-01 95.7% 91.5%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 38.0 3.10e-01 76.8% 40.3%
1yw6B00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 38.0 2.55e-01 78.3% 22.2%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.53 44.0 4.15e-01 100.0% 84.4%
2derA02 2.30.30.280 Mainly Beta › Roll › SH3 type barrels. › Adenine nucleotide alpha hydrolases-like domains 0.52 40.0 4.04e-01 89.9% 85.5%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.52 43.0 3.44e-01 100.0% 73.5%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 39.0 3.96e-01 97.1% 86.4%
3vygD00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.30e-01 81.2% 76.5%
4rcnB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 38.0 3.71e-01 79.7% 93.5%
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.83e-01 100.0% 71.9%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.50 37.0 2.70e-01 84.1% 30.3%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.50 33.0 3.18e-01 81.2% 57.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272448 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.89 80.0 7.09e-01 100.0% 69.5%
5078307 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.87 74.0 7.17e-01 100.0% 82.7%
1954233 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.79 74.0 6.71e-01 100.0% 80.9%
1714452 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.78 72.0 6.60e-01 100.0% 81.6%
4995824 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 62.0 6.10e-01 100.0% 89.0%
4127062 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.71 63.0 4.32e-01 100.0% 86.0%
4311277 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 62.0 4.45e-01 100.0% 91.8%
4489240 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.69 61.0 4.43e-01 100.0% 88.4%
4954501 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 60.0 5.27e-01 95.7% 69.0%
3635125 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.68 52.0 3.97e-01 82.6% 78.7%
3165720 1.1.7.13 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.68 60.0 4.63e-01 100.0% 77.5%
3602341 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 59.0 5.42e-01 95.7% 76.7%
4966449 1.1.13.72 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CBS 0.68 59.0 5.28e-01 95.7% 72.6%
3387535 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.68 60.0 4.39e-01 100.0% 95.3%
1949793 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.67 59.0 4.22e-01 100.0% 94.2%
4030635 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.67 59.0 4.03e-01 100.0% 76.4%
4951403 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 58.0 5.29e-01 95.7% 76.7%
4016867 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 60.0 5.05e-01 100.0% 77.4%
4999850 1.1.7.13 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.66 59.0 4.54e-01 100.0% 74.2%
4460819 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 58.0 5.15e-01 100.0% 75.0%
4588531 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.65 50.0 4.13e-01 85.5% 94.6%
3313542 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.62 53.0 4.72e-01 100.0% 86.7%
4954732 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.62 55.0 5.04e-01 100.0% 84.4%
3322961 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.62 53.0 4.96e-01 100.0% 93.3%
4959198 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.61 49.0 3.99e-01 89.9% 80.4%
3388074 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 54.0 4.95e-01 100.0% 75.6%
3726302 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.61 49.0 3.93e-01 89.9% 75.9%
4446427 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.60 48.0 3.93e-01 88.4% 78.5%
3590326 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.60 52.0 4.58e-01 100.0% 86.7%
3250056 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 53.0 4.38e-01 100.0% 80.8%
3693075 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.60 48.0 3.80e-01 89.9% 89.3%
3168554 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.60 47.0 3.96e-01 88.4% 85.6%
4486974 1.1.7.84 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CzcB_C 0.59 51.0 4.65e-01 100.0% 72.2%
4141763 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.59 46.0 3.77e-01 88.4% 82.1%
3785974 3613.1.1.1 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Clp1 0.59 48.0 3.83e-01 89.9% 85.6%
3735267 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 50.0 4.77e-01 100.0% 90.6%
5057746 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 50.0 3.77e-01 100.0% 71.3%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.58 41.0 3.82e-01 75.4% 62.2%
4228697 3613.1.1.2 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › NOL9_C 0.58 46.0 3.76e-01 88.4% 66.7%
3930396 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.58 47.0 3.77e-01 89.9% 80.7%
1005556 10.2.1.65 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel 0.58 50.0 4.66e-01 100.0% 92.0%
3556566 3613.1.1.1 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Clp1 0.58 46.0 3.91e-01 89.9% 81.7%
3987212 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 49.0 4.34e-01 100.0% 82.9%
3268230 11.1.1.1097 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7932 0.56 46.0 3.95e-01 100.0% 94.6%
3738927 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.56 40.0 3.31e-01 75.4% 70.4%
4599558 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 4.46e-01 98.6% 95.6%
3950486 4.6.1.5 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M 0.56 42.0 4.18e-01 88.4% 76.0%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.06e-01 78.3% 80.0%
4270536 1.1.7.96 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FIST_C 0.56 48.0 4.29e-01 98.6% 86.0%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.55 41.0 4.20e-01 78.3% 89.2%
4441313 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 45.0 4.19e-01 100.0% 81.1%
4586383 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 2.87e-01 78.3% 32.0%
4418258 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 3.69e-01 79.7% 93.8%
4009819 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 3.70e-01 81.2% 86.3%
3942241 325.1.7.22 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_CusB 0.51 38.0 3.82e-01 81.2% 98.6%
4122988 11.1.1.929 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28202 0.51 42.0 3.53e-01 100.0% 95.6%
1839945 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.50 41.0 3.82e-01 100.0% 71.1%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.56e-01 79.7% 75.9%
5037354 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 3.01e-01 71.0% 62.9%
D2 high residues 457-565
PDB
Domain cluster: rep: IMGVR_UViG_3300009653_000468-3300009653-Ga0116169_100094025__D2-99
D3 medium residues 40-133_203-333
PDB
Domain cluster: rep: IMGVR_UViG_3300010239_000028-3300010239-Ga0136451_1000008931__D3-126_211-326
D4 medium residues 334-397
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nk6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 66.0 3.97e-01 100.0% 19.3%
2qyuA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.66 57.0 4.37e-01 100.0% 43.3%
2i3dB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 54.0 3.73e-01 93.8% 33.8%
1tezA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 46.0 3.73e-01 79.7% 99.2%
2uz0A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 52.0 3.56e-01 100.0% 51.8%
3zf8A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.60 47.0 3.07e-01 84.4% 26.7%
4inzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 49.0 3.24e-01 95.3% 56.6%
4xjvA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 47.0 3.36e-01 95.3% 69.0%
3kxpA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 3.17e-01 100.0% 71.3%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 43.0 2.92e-01 95.3% 26.1%
3ie7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 45.0 3.01e-01 100.0% 24.9%
3gjzA02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.54 44.0 3.29e-01 92.2% 52.1%
4yhbA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 40.0 3.26e-01 82.8% 43.2%
1im8B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.12e-01 98.4% 54.3%
3g23A02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.52 42.0 3.71e-01 95.3% 87.6%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.50 43.0 2.81e-01 95.3% 42.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4989937 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 63.0 4.43e-01 100.0% 30.0%
3715374 207.14.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DGF-1_beta-sheet 0.70 55.0 4.69e-01 85.9% 57.1%
3428862 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.64 54.0 3.62e-01 98.4% 25.7%
5034080 207.2.2.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin 0.64 54.0 4.62e-01 100.0% 60.0%
3353302 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.64 54.0 3.68e-01 100.0% 35.0%
3453077 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.63 53.0 3.42e-01 98.4% 20.9%
3430298 207.1.1.133 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 0.63 53.0 3.34e-01 100.0% 16.8%
3687138 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 45.0 3.39e-01 81.2% 61.2%
2604197 7514.1.1.2 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › SIP 0.56 42.0 3.54e-01 82.8% 96.6%
3246969 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.53 40.0 2.73e-01 84.4% 23.7%
4449991 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 38.0 2.93e-01 79.7% 30.9%
4317207 2493.1.1.4 ↗ a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like › DRTGG 0.52 42.0 3.45e-01 93.8% 53.8%
D5 medium residues 398-456
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.77 47.0 3.39e-01 78.0% 22.9%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 46.0 4.27e-01 86.4% 57.1%
2icgA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.64 46.0 3.39e-01 76.3% 44.0%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 44.0 2.70e-01 79.7% 12.0%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 51.0 3.46e-01 96.6% 30.7%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.60 44.0 3.57e-01 81.4% 41.8%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.62e-01 79.7% 46.4%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 44.0 3.78e-01 83.1% 49.0%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.67e-01 81.4% 20.4%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 42.0 3.01e-01 79.7% 26.2%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 39.0 3.40e-01 71.2% 71.6%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.50e-01 81.4% 50.5%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.56 46.0 3.04e-01 100.0% 87.4%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 3.04e-01 96.6% 93.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.61e-01 81.4% 58.0%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.14e-01 81.4% 90.6%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.09e-01 98.3% 28.6%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.08e-01 81.4% 38.5%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.19e-01 98.3% 32.2%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 34.0 2.84e-01 74.6% 37.0%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 2.75e-01 79.7% 71.6%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.01e-01 83.1% 69.3%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.46e-01 83.1% 20.2%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 44.0 3.36e-01 100.0% 70.6%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 38.0 3.10e-01 79.7% 40.9%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 38.0 3.23e-01 86.4% 69.6%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.04e-01 78.0% 44.2%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 38.0 3.13e-01 100.0% 38.8%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.51 45.0 3.60e-01 98.3% 53.8%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 40.0 3.00e-01 94.9% 83.2%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.50 35.0 2.95e-01 81.4% 39.1%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 2.99e-01 81.4% 81.0%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 2.91e-01 79.7% 39.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963350 220.1.1.323 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7115 0.66 45.0 3.76e-01 79.7% 42.0%
3962822 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.62 49.0 3.74e-01 86.4% 41.5%
3262894 59.1.3.1 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.59 43.0 3.64e-01 79.7% 64.8%
3593073 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 45.0 3.14e-01 83.1% 32.8%
5081796 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 43.0 3.09e-01 81.4% 27.6%
3430171 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 42.0 2.51e-01 79.7% 11.2%
3987480 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.57 42.0 3.01e-01 79.7% 27.0%
3167811 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 43.0 3.32e-01 81.4% 82.2%
3432908 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 42.0 2.62e-01 79.7% 14.4%
3481960 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.57 42.0 3.28e-01 79.7% 42.3%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.56 42.0 3.61e-01 83.1% 52.0%
4942106 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.56 41.0 2.61e-01 79.7% 15.8%
3794752 5.1.3.222 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_LRRK2 0.55 40.0 2.43e-01 79.7% 11.2%
3309808 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 40.0 2.75e-01 81.4% 21.4%
3723461 4099.1.1.9 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med27 0.55 39.0 3.02e-01 78.0% 70.3%
3571692 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.55 40.0 2.43e-01 78.0% 12.4%
3523283 389.1.1.176 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Pep_M12B_propep 0.54 39.0 3.22e-01 83.1% 95.2%
5063609 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.26e-01 79.7% 46.3%
3598882 4086.1.1.0 ↗ a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like 0.53 36.0 3.33e-01 72.9% 68.8%
3608681 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.53 39.0 2.38e-01 81.4% 11.5%
342906 10.1.1.27 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 0.52 44.0 3.04e-01 98.3% 28.9%
3496180 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.04e-01 81.4% 73.1%
3672152 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.51 38.0 2.53e-01 91.5% 86.6%
3861538 220.1.1.118 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.51 38.0 3.02e-01 81.4% 87.2%
3253057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 37.0 2.81e-01 81.4% 83.2%
3475430 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 37.0 2.78e-01 81.4% 75.0%