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IMGVR_UViG_3300025590_000015-3300025590-Ga0209195_100023920

Arc-Vir

IMGVR_UViG_3300025590_000015-3300025590-Ga0209195_100023920

Quality

94.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-44
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.84 76.0 6.12e-01 100.0% 73.4%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.84 77.0 6.78e-01 100.0% 80.0%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.84 71.0 6.86e-01 100.0% 90.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.82 70.0 5.89e-01 100.0% 72.4%
3k7mX02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.78 68.0 4.36e-01 100.0% 35.0%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.78 57.0 4.26e-01 100.0% 31.2%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.75 57.0 4.20e-01 100.0% 31.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.73 62.0 4.69e-01 100.0% 54.1%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 58.0 4.93e-01 100.0% 98.6%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 49.0 3.26e-01 100.0% 18.9%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 46.0 3.14e-01 100.0% 19.7%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.64 51.0 4.39e-01 100.0% 53.8%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 51.0 4.32e-01 95.3% 92.4%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 51.0 4.06e-01 95.3% 81.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.62 53.0 4.47e-01 100.0% 60.5%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 52.0 4.27e-01 100.0% 78.8%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.62 52.0 4.87e-01 100.0% 89.1%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 51.0 4.24e-01 97.7% 87.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 52.0 3.99e-01 100.0% 54.7%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 51.0 3.74e-01 100.0% 95.2%
1wx9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 48.0 4.07e-01 100.0% 72.1%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 48.0 3.27e-01 100.0% 34.0%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.59 41.0 3.50e-01 95.3% 42.9%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 51.0 3.74e-01 100.0% 97.4%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 49.0 3.80e-01 100.0% 98.1%
2ep6A01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 48.0 3.58e-01 100.0% 96.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 46.0 3.77e-01 100.0% 52.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 46.0 3.76e-01 100.0% 51.1%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 3.79e-01 97.7% 89.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 44.0 3.15e-01 100.0% 28.7%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 45.0 3.31e-01 100.0% 81.4%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.46e-01 100.0% 44.6%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.78e-01 100.0% 50.6%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 2.98e-01 88.4% 32.9%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 42.0 3.65e-01 100.0% 82.6%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 43.0 3.71e-01 95.3% 100.0%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.01e-01 100.0% 36.4%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 43.0 3.15e-01 100.0% 43.9%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 38.0 3.72e-01 93.0% 85.7%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 34.0 2.19e-01 79.1% 34.2%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.22e-01 100.0% 38.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.98 93.0 8.72e-01 100.0% 86.0%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.93 86.0 7.34e-01 100.0% 87.7%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.89 79.0 7.80e-01 97.7% 95.6%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.86 74.0 7.38e-01 100.0% 93.3%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.85 73.0 7.25e-01 100.0% 93.3%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.84 76.0 7.19e-01 100.0% 90.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.83 69.0 6.89e-01 100.0% 93.3%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.82 73.0 6.03e-01 100.0% 96.0%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.81 67.0 6.52e-01 100.0% 84.0%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.80 66.0 6.41e-01 100.0% 84.0%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.80 67.0 5.63e-01 100.0% 62.0%
4016088 821.1.1.3 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.78 69.0 5.17e-01 100.0% 41.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.77 65.0 5.91e-01 100.0% 78.3%
5007155 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.75 64.0 6.37e-01 100.0% 93.3%
4009311 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.74 61.0 5.48e-01 100.0% 69.2%
3942988 4187.2.1.1 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.71 58.0 5.23e-01 100.0% 67.7%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 57.0 5.55e-01 100.0% 94.0%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.68 60.0 5.94e-01 100.0% 95.6%
3497076 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 56.0 4.49e-01 95.3% 91.1%
4271417 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.67 50.0 3.07e-01 81.4% 36.2%
3810151 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.67 55.0 4.82e-01 97.7% 97.1%
3973395 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.66 58.0 5.20e-01 100.0% 96.7%
4991814 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.66 56.0 3.98e-01 100.0% 58.6%
3993535 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 54.0 4.46e-01 95.3% 95.0%
4941492 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.65 56.0 5.05e-01 100.0% 96.7%
5017876 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 52.0 4.64e-01 95.3% 100.0%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 48.0 3.71e-01 83.7% 34.3%
4975073 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.63 52.0 4.58e-01 100.0% 92.9%
4978332 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.63 52.0 4.39e-01 100.0% 96.2%
3747259 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.62 51.0 4.67e-01 97.7% 76.7%
3404175 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 52.0 4.85e-01 95.3% 74.5%
5036777 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.62 51.0 4.42e-01 100.0% 92.0%
5029894 2004.1.2.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.62 52.0 3.54e-01 97.7% 25.5%
3343923 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.61 49.0 3.02e-01 97.7% 28.6%
4958999 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.60 51.0 4.57e-01 100.0% 98.5%
4461643 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.60 50.0 4.56e-01 95.3% 68.3%
3587556 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.60 47.0 4.20e-01 95.3% 84.3%
3957797 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.60 46.0 4.23e-01 95.3% 100.0%
4938807 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.58 47.0 4.33e-01 100.0% 100.0%
3715519 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 2.77e-01 83.7% 18.0%
5013656 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 47.0 4.31e-01 100.0% 98.3%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.56 45.0 2.97e-01 100.0% 31.6%
3260247 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.56 45.0 3.81e-01 100.0% 89.2%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 46.0 3.08e-01 100.0% 33.0%
5016890 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.55 45.0 3.44e-01 95.3% 97.3%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 44.0 2.93e-01 100.0% 30.5%
3543655 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 44.0 2.91e-01 100.0% 31.4%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 43.0 2.95e-01 100.0% 34.9%
4488855 275.1.1.5 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.54 45.0 3.74e-01 100.0% 98.8%
4944238 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.54 42.0 2.93e-01 88.4% 32.7%
3775907 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.54 40.0 2.69e-01 93.0% 69.3%
4543548 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.54 43.0 3.29e-01 95.3% 98.3%
3325991 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.53 44.0 2.94e-01 100.0% 41.5%
3637401 4081.1.1.8 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 0.53 39.0 2.63e-01 90.7% 23.2%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 42.0 2.93e-01 100.0% 37.3%
3916476 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.52 41.0 3.48e-01 100.0% 82.4%
4880303 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 41.0 3.29e-01 100.0% 44.8%
4989479 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.51 43.0 3.35e-01 100.0% 97.3%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.51 40.0 2.68e-01 100.0% 32.1%
3934699 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 42.0 2.83e-01 100.0% 26.0%
None 0.51 43.0 3.39e-01 100.0% 62.1%
3205036 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.50 37.0 2.49e-01 95.3% 60.8%