Back to structures

IMGVR_UViG_3300025590_000015-3300025590-Ga0209195_100023955

Arc-Vir

IMGVR_UViG_3300025590_000015-3300025590-Ga0209195_100023955

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-87
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ql0A00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.70 48.0 3.38e-01 72.6% 62.7%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.69 40.0 4.18e-01 84.9% 62.7%
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.67 52.0 3.81e-01 84.9% 82.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 39.0 4.00e-01 74.0% 60.6%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.64 52.0 3.78e-01 87.7% 80.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.84e-01 91.8% 84.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.87e-01 93.2% 90.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.65e-01 93.2% 84.8%
1uyjA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.60 46.0 3.36e-01 80.8% 84.3%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 42.0 3.32e-01 74.0% 36.4%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.60 45.0 3.55e-01 79.5% 41.3%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 44.0 3.83e-01 79.5% 64.5%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 42.0 3.22e-01 76.7% 37.6%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 46.0 3.64e-01 86.3% 43.6%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.38e-01 74.0% 45.9%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 48.0 4.19e-01 93.2% 98.2%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 48.0 3.45e-01 94.5% 49.3%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.57 52.0 3.22e-01 100.0% 87.4%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 45.0 3.66e-01 86.3% 47.1%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.90e-01 91.8% 68.7%
2k5dA01 2.40.50.390 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Conjugative transposon protein, DUF961 0.55 38.0 3.38e-01 86.3% 48.6%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 44.0 3.82e-01 89.0% 88.9%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 40.0 3.70e-01 100.0% 60.2%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 47.0 3.79e-01 98.6% 82.4%
3e66A01 3.30.420.230 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region 0.54 44.0 3.53e-01 94.5% 78.9%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 44.0 4.12e-01 90.4% 73.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.54 46.0 3.91e-01 95.9% 72.8%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 42.0 3.58e-01 100.0% 50.4%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 4.06e-01 84.9% 78.2%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.53 38.0 3.32e-01 75.3% 95.7%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 3.57e-01 75.3% 67.1%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.53 33.0 3.46e-01 83.6% 69.2%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 41.0 3.49e-01 86.3% 55.1%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.44e-01 100.0% 68.2%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 41.0 3.55e-01 86.3% 85.5%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 3.49e-01 89.0% 78.0%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.52e-01 84.9% 59.3%
2r39A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.85e-01 94.5% 93.6%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.90e-01 97.3% 71.5%
3pfnC02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.51 46.0 3.72e-01 100.0% 70.1%
4blqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.56e-01 78.1% 63.3%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 41.0 3.64e-01 90.4% 78.4%
1bcpA00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.51 44.0 3.14e-01 97.3% 90.6%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 2.72e-01 97.3% 82.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4187163 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.73 44.0 3.74e-01 89.0% 38.3%
4329624 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.71 44.0 3.87e-01 90.4% 42.9%
4057742 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.70 43.0 4.57e-01 86.3% 70.8%
4123140 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.69 42.0 3.73e-01 90.4% 41.7%
4457428 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.67 42.0 3.64e-01 90.4% 40.9%
4515154 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.67 41.0 3.58e-01 90.4% 39.1%
3699292 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.66 53.0 4.01e-01 90.4% 35.1%
5060010 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 39.0 4.72e-01 71.2% 95.6%
3712649 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.66 56.0 3.39e-01 95.9% 66.9%
4052112 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.65 53.0 3.76e-01 89.0% 94.0%
3391001 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.64 52.0 3.73e-01 90.4% 46.4%
3599997 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 54.0 3.07e-01 97.3% 86.1%
4953226 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 44.0 4.61e-01 80.8% 81.5%
3907317 378.1.1.1 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.63 51.0 3.50e-01 89.0% 26.9%
3712703 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.62 55.0 3.62e-01 100.0% 73.7%
4025256 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 50.0 4.85e-01 86.3% 78.8%
4012633 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.62 49.0 3.77e-01 86.3% 77.0%
2429408 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.62 49.0 3.56e-01 89.0% 94.5%
3396462 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 49.0 5.18e-01 86.3% 96.9%
3484191 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 50.0 3.49e-01 93.2% 47.7%
5017342 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 43.0 3.54e-01 93.2% 40.7%
3717251 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.55e-01 71.2% 94.5%
5036880 330.1.1.35 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.60 43.0 4.38e-01 78.1% 77.1%
4268790 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.60 42.0 3.50e-01 94.5% 41.5%
3412668 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 49.0 4.10e-01 87.7% 84.2%
3929524 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 52.0 3.85e-01 94.5% 59.4%
3598904 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 49.0 3.44e-01 94.5% 47.7%
3709339 2484.1.1.62 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PRP8_domainIV 0.59 49.0 3.44e-01 95.9% 51.5%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 45.0 3.80e-01 83.6% 78.4%
3372143 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.58 42.0 3.57e-01 76.7% 66.4%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 47.0 3.93e-01 86.3% 80.0%
163996 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.58 46.0 3.85e-01 86.3% 59.4%
3650703 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 47.0 3.59e-01 87.7% 70.3%
2161598 2484.1.1.62 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PRP8_domainIV 0.57 48.0 3.31e-01 95.9% 47.5%
3185712 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.33e-01 72.6% 57.6%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 45.0 3.38e-01 83.6% 67.9%
4046880 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 41.0 3.89e-01 91.8% 62.2%
3646441 2484.1.1.205 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.57 48.0 4.22e-01 94.5% 75.5%
3173646 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 3.53e-01 89.0% 67.3%
5078865 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 39.0 3.28e-01 74.0% 43.0%
3821429 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 43.0 3.29e-01 80.8% 52.5%
4976409 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.56 39.0 3.44e-01 74.0% 56.4%
3166158 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.56 43.0 3.83e-01 83.6% 59.0%
3893274 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 43.0 3.43e-01 84.9% 85.3%
3660107 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 46.0 3.73e-01 91.8% 77.9%
4945471 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 4.09e-01 97.3% 87.7%
5005630 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.55 43.0 3.92e-01 86.3% 67.0%
3678708 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 3.53e-01 91.8% 97.4%
3931897 69.1.2.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.54 45.0 3.80e-01 91.8% 63.2%
4847872 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.54 38.0 3.28e-01 74.0% 88.8%
3978255 3523.1.1.0 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.54 42.0 3.70e-01 83.6% 59.0%
3250605 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 43.0 3.69e-01 90.4% 75.2%
4411984 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.54 44.0 3.41e-01 94.5% 55.0%
3572060 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.53 44.0 3.80e-01 93.2% 70.8%
3217379 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.53 43.0 3.98e-01 90.4% 83.2%
3236475 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 43.0 3.56e-01 90.4% 76.3%
3949297 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.53 42.0 3.70e-01 84.9% 59.0%
4636444 288.1.1.2 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CheD 0.52 38.0 2.97e-01 82.2% 85.8%
3666058 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.51 40.0 3.70e-01 86.3% 88.4%
5010248 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 40.0 3.91e-01 86.3% 87.5%
3680043 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.51e-01 90.4% 70.0%
4944716 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.51 40.0 2.95e-01 86.3% 51.2%
3598157 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 41.0 2.80e-01 100.0% 69.3%
3259224 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 4.09e-01 91.8% 97.5%