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IMGVR_UViG_3300025590_000015-3300025590-Ga0209195_100023977

Arc-Vir

IMGVR_UViG_3300025590_000015-3300025590-Ga0209195_100023977

Identity

Kingdom:
archaea

Quality

88.7 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-62
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 43.0 4.25e-01 98.4% 62.7%
1tuzA00 1.10.238.110 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha. 0.64 55.0 4.55e-01 100.0% 69.5%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 45.0 4.04e-01 74.2% 69.0%
1uurA03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 54.0 4.87e-01 100.0% 88.6%
2lvvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 52.0 3.64e-01 96.8% 30.9%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 52.0 5.02e-01 98.4% 84.9%
2ki4B00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 51.0 4.46e-01 93.5% 74.0%
2i7aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 50.0 3.83e-01 95.2% 43.9%
3nskB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 51.0 4.63e-01 100.0% 81.5%
1bocA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 51.0 4.82e-01 96.8% 97.4%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 46.0 4.12e-01 83.9% 89.0%
1irjA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 49.0 4.51e-01 95.2% 87.1%
1qlsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 49.0 4.31e-01 95.2% 73.7%
1eg3A04 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 47.0 4.39e-01 95.2% 90.2%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 38.0 4.15e-01 93.5% 89.4%
7ae2A01 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.58 50.0 3.97e-01 100.0% 86.1%
1qasA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 47.0 4.31e-01 95.2% 80.7%
1m6nA05 1.10.1200.230 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.58 48.0 4.44e-01 100.0% 75.3%
2scpA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 47.0 3.56e-01 96.8% 81.6%
1oqcA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.57 47.0 4.03e-01 100.0% 60.7%
4pcwC00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 47.0 4.20e-01 95.2% 79.1%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 46.0 4.37e-01 100.0% 100.0%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 39.0 3.72e-01 74.2% 63.9%
1aj4A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 46.0 3.55e-01 100.0% 42.5%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.54 38.0 3.33e-01 77.4% 79.0%
3qwlA01 1.10.10.750 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ypt/Rab-GAP domain of gyp1p, domain 1 0.54 40.0 4.12e-01 80.6% 86.4%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.53 36.0 3.23e-01 74.2% 46.3%
6wv5A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.53 38.0 3.05e-01 79.0% 54.4%
7znvA01 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.52 42.0 3.10e-01 95.2% 69.7%
2m7lA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 40.0 4.11e-01 93.5% 94.8%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.90e-01 88.7% 84.4%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 4.02e-01 95.2% 92.5%
2b8iA00 1.20.1280.100 Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain 0.52 46.0 4.33e-01 100.0% 94.8%
7zclA01 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.52 43.0 3.15e-01 100.0% 47.3%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.52 36.0 3.48e-01 77.4% 82.9%
1dtoA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.51 41.0 3.62e-01 95.2% 93.1%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.87e-01 95.2% 93.8%
3pm8B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 41.0 3.84e-01 96.8% 91.7%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.86e-01 87.1% 97.1%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.91e-01 88.7% 100.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024888 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 57.0 5.66e-01 96.8% 95.4%
3390644 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 54.0 4.94e-01 90.3% 80.0%
3781910 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 56.0 4.16e-01 100.0% 41.1%
3237573 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 57.0 5.65e-01 100.0% 95.4%
4995268 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.65 55.0 4.46e-01 100.0% 76.9%
3704392 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 55.0 5.47e-01 100.0% 95.4%
4950148 108.4.1.3 ↗ alpha arrays › EF-hand › Hypothetical protein MTH865 › Hypothetical protein MTH865 › DUF2795 0.65 44.0 4.49e-01 82.3% 73.3%
3789525 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 54.0 4.88e-01 96.8% 86.7%
3614894 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 53.0 3.98e-01 96.8% 41.2%
3542516 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 54.0 4.69e-01 100.0% 71.4%
3835982 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.64 55.0 4.85e-01 100.0% 82.1%
3683028 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.64 54.0 4.76e-01 96.8% 67.4%
5052974 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 5.06e-01 98.4% 94.7%
3712448 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 54.0 4.95e-01 100.0% 80.0%
3905883 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 53.0 3.93e-01 100.0% 83.3%
4982590 101.1.2.750 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27374 0.63 46.0 4.12e-01 79.0% 85.6%
3715887 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.62 42.0 4.00e-01 71.0% 86.7%
3909625 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.62 51.0 4.86e-01 95.2% 80.0%
3712436 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 51.0 4.05e-01 95.2% 60.7%
166974 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.61 52.0 5.14e-01 100.0% 92.6%
3385907 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 41.0 4.33e-01 93.5% 80.0%
4025934 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 52.0 5.04e-01 100.0% 95.7%
3762833 108.1.1.110 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6, EF-hand_8 0.61 52.0 3.82e-01 100.0% 37.2%
3568067 108.1.1.2 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1,S_100 0.60 51.0 4.83e-01 100.0% 93.7%
3886977 108.1.1.102 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100, EF-hand_7 0.60 50.0 4.43e-01 95.2% 74.7%
3718113 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 50.0 4.70e-01 100.0% 95.0%
4982322 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.60 42.0 2.95e-01 100.0% 21.4%
3340253 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 50.0 4.62e-01 100.0% 80.0%
3925016 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.60 51.0 4.93e-01 100.0% 94.3%
4218411 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.60 50.0 4.61e-01 100.0% 80.0%
4129363 108.1.1.8 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100 0.59 48.0 4.04e-01 95.2% 61.7%
3497942 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.59 48.0 3.99e-01 95.2% 61.0%
3762520 108.1.1.8 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100 0.59 47.0 4.31e-01 95.2% 82.2%
3312541 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.57 47.0 4.43e-01 96.8% 81.2%
1293857 108.1.1.4 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 46.0 4.48e-01 95.2% 93.2%
3801110 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.56 48.0 3.01e-01 100.0% 90.6%
3952422 101.1.2.642 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3631 0.56 48.0 4.30e-01 98.4% 93.3%
4201679 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 39.0 3.60e-01 91.9% 54.1%
3482581 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 41.0 3.86e-01 83.9% 66.3%
3171512 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.54 46.0 3.02e-01 100.0% 63.1%
4011573 108.3.1.0 ↗ alpha arrays › EF-hand › Cloroperoxidase › Cloroperoxidase 0.54 44.0 3.78e-01 100.0% 70.4%
3618002 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 43.0 4.01e-01 95.2% 70.6%
3720812 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.54e-01 87.1% 69.1%
1557041 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 43.0 3.87e-01 95.2% 85.1%
3431908 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.53 46.0 4.45e-01 98.4% 94.3%
4061974 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.53 44.0 3.98e-01 96.8% 84.4%
140413 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.52 41.0 4.03e-01 88.7% 92.8%
5003128 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.51e-01 88.7% 70.0%
3478434 631.1.1.1 ↗ alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP 0.51 41.0 2.98e-01 98.4% 50.4%
5066705 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.96e-01 93.5% 80.0%
4991792 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.90e-01 87.1% 97.1%
3881792 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.51 38.0 3.61e-01 85.5% 72.5%
3597445 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 40.0 3.79e-01 95.2% 71.2%
3785233 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.51 41.0 2.68e-01 100.0% 26.7%