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IMGVR_UViG_3300025592_000629-3300025592-Ga0209658_10028901
Arc-VirIMGVR_UViG_3300025592_000629-3300025592-Ga0209658_10028901
Identity
- Kingdom:
- archaea
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67
Domain cluster:
rep: IMGVR_UViG_3300000154_000091-3300000154-SI47jul10_150mDRAFT_10024401__D2-56
D2
medium
residues 73-105
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.68 | 52.0 | 3.91e-01 | 100.0% | 95.1% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 49.0 | 3.78e-01 | 100.0% | 95.0% |
| 7xgtA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.65 | 48.0 | 2.89e-01 | 100.0% | 11.1% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 48.0 | 3.38e-01 | 100.0% | 24.4% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.64 | 49.0 | 3.03e-01 | 100.0% | 13.5% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.62 | 44.0 | 2.81e-01 | 81.8% | 54.6% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 47.0 | 2.91e-01 | 100.0% | 14.2% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 40.0 | 2.48e-01 | 97.0% | 9.7% |
| 3dlbA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 46.0 | 2.96e-01 | 100.0% | 16.6% |
| 1fyhB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 3.53e-01 | 100.0% | 61.9% |
| 4kc5C03 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.58 | 42.0 | 2.58e-01 | 100.0% | 10.7% |
| 2v5gA00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.58 | 44.0 | 3.18e-01 | 100.0% | 25.0% |
| 1cidA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 3.78e-01 | 100.0% | 63.4% |
| 2oplA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 44.0 | 2.91e-01 | 100.0% | 20.3% |
| 8djfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 41.0 | 2.54e-01 | 97.0% | 46.0% |
| 3p9vA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 40.0 | 2.80e-01 | 100.0% | 19.6% |
| 4rnyA03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.56 | 41.0 | 2.98e-01 | 100.0% | 39.1% |
| 4jotA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 41.0 | 2.65e-01 | 100.0% | 14.6% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.56 | 42.0 | 3.33e-01 | 100.0% | 37.0% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.55 | 41.0 | 2.91e-01 | 100.0% | 21.4% |
| 1xg9A02 | 3.10.25.20 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › | 0.55 | 40.0 | 3.52e-01 | 100.0% | 50.0% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.54 | 40.0 | 3.83e-01 | 100.0% | 68.8% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.54 | 41.0 | 3.35e-01 | 100.0% | 43.8% |
| 4bh5A00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.54 | 42.0 | 2.93e-01 | 100.0% | 40.8% |
| 2bzlA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 42.0 | 2.56e-01 | 100.0% | 25.0% |
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.33e-01 | 100.0% | 65.1% |
| 5hh1A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 36.0 | 2.51e-01 | 100.0% | 27.2% |
| 6fcvB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 41.0 | 2.41e-01 | 100.0% | 10.7% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 38.0 | 2.41e-01 | 100.0% | 11.3% |
| 5c86A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 2.82e-01 | 84.8% | 27.7% |
| 1i8nA00 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.52 | 40.0 | 3.14e-01 | 100.0% | 98.9% |
| 6krwA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 39.0 | 2.42e-01 | 100.0% | 11.8% |
| 1zc0A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 39.0 | 2.38e-01 | 93.9% | 28.0% |
| 3kulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 38.0 | 2.96e-01 | 100.0% | 34.8% |
| 2l8kA00 | 3.30.1330.220 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha | 0.51 | 39.0 | 2.84e-01 | 100.0% | 25.2% |
| 1n7vA01 | 2.105.10.10 | Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller | 0.51 | 36.0 | 2.53e-01 | 100.0% | 21.5% |
| 1gmeA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 2.65e-01 | 100.0% | 60.0% |
| 4ckbD02 | 3.20.100.20 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › | 0.51 | 36.0 | 2.40e-01 | 100.0% | 51.2% |
| 4eq3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.05e-01 | 100.0% | 76.5% |
| 2q1zB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 35.0 | 2.74e-01 | 100.0% | 29.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3306435 | 245.3.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain › BRX | 0.70 | 51.0 | 4.52e-01 | 100.0% | 51.9% |
| 4021631 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.70 | 53.0 | 3.37e-01 | 100.0% | 15.1% |
| 3320717 | 3433.1.1.3 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › BRX | 0.69 | 51.0 | 4.46e-01 | 100.0% | 51.9% |
| 3585029 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.65 | 54.0 | 2.89e-01 | 100.0% | 4.1% |
| 3598340 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 50.0 | 2.89e-01 | 100.0% | 8.9% |
| 4025332 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.61 | 48.0 | 2.78e-01 | 100.0% | 8.4% |
| 3830852 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.61 | 46.0 | 2.71e-01 | 100.0% | 10.0% |
| 3435183 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 48.0 | 3.89e-01 | 100.0% | 45.7% |
| 3518432 | 220.1.1.79 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C | 0.60 | 46.0 | 3.36e-01 | 100.0% | 29.6% |
| 3198829 | 220.1.1.43 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH | 0.59 | 44.0 | 3.17e-01 | 100.0% | 25.8% |
| 3422823 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.59 | 43.0 | 3.07e-01 | 100.0% | 83.4% |
| 3640668 | 719.1.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF | 0.59 | 44.0 | 3.25e-01 | 100.0% | 27.2% |
| 4242808 | 101.1.8.6 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat | 0.58 | 43.0 | 3.07e-01 | 100.0% | 25.0% |
| 3735669 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.58 | 46.0 | 3.39e-01 | 100.0% | 33.0% |
| 3990088 | 2008.1.1.155 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc | 0.57 | 46.0 | 3.02e-01 | 100.0% | 19.4% |
| 2628565 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 42.0 | 4.14e-01 | 100.0% | 75.0% |
| 1146037 | 5.1.2.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_68 | 0.56 | 44.0 | 2.47e-01 | 100.0% | 8.9% |
| 3257765 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.56 | 42.0 | 2.81e-01 | 100.0% | 18.8% |
| 3565764 | 391.1.2.16 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_C | 0.56 | 43.0 | 3.99e-01 | 100.0% | 66.7% |
| 4278285 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.55 | 41.0 | 2.30e-01 | 72.7% | 5.3% |
| 4941329 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 42.0 | 3.18e-01 | 97.0% | 62.0% |
| 3511593 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 40.0 | 2.62e-01 | 100.0% | 15.1% |
| 806 | 270.1.1.4 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C_2 | 0.55 | 40.0 | 3.52e-01 | 100.0% | 50.0% |
| 3266702 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 3.04e-01 | 100.0% | 31.2% |
| 141164 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.53 | 37.0 | 2.64e-01 | 100.0% | 19.7% |
| 3855356 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 37.0 | 2.28e-01 | 90.9% | 18.8% |
| 3319618 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.52 | 42.0 | 2.65e-01 | 100.0% | 16.3% |
| 3721942 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.52 | 38.0 | 2.91e-01 | 100.0% | 29.5% |
| 3237464 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 37.0 | 2.22e-01 | 81.8% | 13.7% |
| 3282976 | 10.12.1.4 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom | 0.52 | 41.0 | 2.70e-01 | 100.0% | 63.9% |
| 3456369 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.52 | 36.0 | 2.56e-01 | 100.0% | 23.2% |
| 3974032 | 506.2.1.1 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UB2H | 0.52 | 39.0 | 3.05e-01 | 90.9% | 60.0% |
| 4154363 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.51 | 41.0 | 2.86e-01 | 100.0% | 33.1% |
| 3826751 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.51 | 38.0 | 3.15e-01 | 100.0% | 42.5% |
| 3164354 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.51 | 37.0 | 2.45e-01 | 93.9% | 22.6% |
| 3713805 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 35.0 | 2.19e-01 | 90.9% | 74.8% |
| 4013179 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.51 | 40.0 | 2.86e-01 | 97.0% | 30.4% |
| 163278 | 10.12.1.4 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom | 0.51 | 34.0 | 2.36e-01 | 100.0% | 55.6% |
| 4339637 | 506.2.1.1 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UB2H | 0.50 | 37.0 | 2.97e-01 | 87.9% | 48.8% |
| 3486056 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 40.0 | 2.76e-01 | 97.0% | 35.8% |