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IMGVR_UViG_3300025592_001004-3300025592-Ga0209658_10008751
Arc-VirIMGVR_UViG_3300025592_001004-3300025592-Ga0209658_10008751
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-72
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2orwB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 40.0 | 3.31e-01 | 95.8% | 34.6% |
| 3nqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.61 | 47.0 | 3.81e-01 | 86.1% | 91.1% |
| 3c2qA02 | 3.40.50.10690 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › putative lor/sdh protein like domains | 0.61 | 48.0 | 3.33e-01 | 86.1% | 97.1% |
| 3wtcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 53.0 | 3.58e-01 | 97.2% | 30.1% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.59 | 42.0 | 2.87e-01 | 88.9% | 21.2% |
| 1zemA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 51.0 | 3.49e-01 | 98.6% | 46.2% |
| 4d9kA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 43.0 | 2.98e-01 | 94.4% | 23.4% |
| 1t7pA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.56 | 41.0 | 3.15e-01 | 76.4% | 87.9% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.55 | 50.0 | 3.48e-01 | 100.0% | 32.8% |
| 4u3aB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 45.0 | 3.07e-01 | 95.8% | 25.5% |
| 3lkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 46.0 | 3.09e-01 | 95.8% | 33.7% |
| 2derB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 47.0 | 3.43e-01 | 98.6% | 40.9% |
| 2zbkA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 47.0 | 3.94e-01 | 97.2% | 66.1% |
| 4i9fA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 37.0 | 3.33e-01 | 94.4% | 50.0% |
| 6xigA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 44.0 | 2.95e-01 | 98.6% | 42.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3919101 | 2007.2.3.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase3 | 0.67 | 54.0 | 3.48e-01 | 88.9% | 32.1% |
| 3257842 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 4.29e-01 | 90.3% | 76.9% |
| 5006800 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.62 | 52.0 | 3.64e-01 | 94.4% | 30.5% |
| 1507866 | 2003.1.5.50 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TylF | 0.60 | 43.0 | 4.57e-01 | 93.1% | 87.5% |
| 3512277 | 2002.1.1.191 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MupG_N | 0.59 | 42.0 | 2.94e-01 | 88.9% | 23.0% |
| 4368214 | 7516.1.1.3 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2,Glyco_transf_7C | 0.58 | 40.0 | 2.32e-01 | 100.0% | 8.2% |
| 3963518 | 7546.1.1.1 ↗ | a/b three-layered sandwiches › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Glutaminase/Asparaginase N-terminal domain › Asparaginase | 0.57 | 40.0 | 2.92e-01 | 88.9% | 25.9% |
| 4974794 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.57 | 46.0 | 3.56e-01 | 90.3% | 71.8% |
| 4950238 | 192.5.1.39 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF4405 | 0.57 | 42.0 | 4.01e-01 | 79.2% | 89.4% |
| 3652610 | 109.4.1.543 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › efThoc1 | 0.56 | 49.0 | 3.58e-01 | 98.6% | 69.3% |
| 3371338 | 377.1.1.12 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C5HC2 | 0.56 | 46.0 | 3.82e-01 | 93.1% | 98.5% |
| 4142789 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.56 | 46.0 | 3.04e-01 | 100.0% | 19.7% |
| 5016836 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.56 | 39.0 | 2.87e-01 | 100.0% | 26.3% |
| 3628236 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.55 | 44.0 | 2.79e-01 | 90.3% | 42.2% |
| 4943805 | 2003.1.1.369 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ligase_CoA | 0.55 | 36.0 | 3.01e-01 | 84.7% | 38.4% |
| 3410771 | 2007.2.3.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Myotub-related | 0.55 | 42.0 | 2.75e-01 | 87.5% | 37.0% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.54 | 47.0 | 3.10e-01 | 100.0% | 29.1% |
| 4956840 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.54 | 44.0 | 3.12e-01 | 94.4% | 48.8% |
| 3452820 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.54 | 43.0 | 3.14e-01 | 98.6% | 32.6% |
| 4988012 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.53 | 45.0 | 3.38e-01 | 100.0% | 46.5% |
| 3670890 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 43.0 | 3.57e-01 | 93.1% | 60.0% |
| 3831339 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.52 | 47.0 | 3.15e-01 | 100.0% | 67.2% |
| 3663874 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.51 | 44.0 | 2.82e-01 | 98.6% | 40.3% |
D2
medium
residues 73-129
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yuiA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.63 | 34.0 | 3.54e-01 | 87.7% | 53.7% |
| 6ebqA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 37.0 | 2.86e-01 | 75.4% | 100.0% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.50 | 42.0 | 3.18e-01 | 100.0% | 70.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3234604 | 633.23.1.14 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_3 | 0.54 | 38.0 | 2.79e-01 | 75.4% | 81.7% |
| 4001817 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.50 | 39.0 | 2.39e-01 | 96.5% | 38.6% |